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Estimating parameters of nonlinear dynamic systems in pharmacology using chaos synchronization and grid search
Bridging fundamental approaches to model optimization for pharmacometricians, systems pharmacologists and statisticians is a critical issue. These fields rely primarily on Maximum Likelihood and Extended Least Squares metrics with iterative estimation of parameters. Our research combines adaptive ch...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6491657/ https://www.ncbi.nlm.nih.gov/pubmed/30929120 http://dx.doi.org/10.1007/s10928-019-09629-4 |
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author | Pillai, Nikhil Schwartz, Sorell L. Ho, Thang Dokoumetzidis, Aris Bies, Robert Freedman, Immanuel |
author_facet | Pillai, Nikhil Schwartz, Sorell L. Ho, Thang Dokoumetzidis, Aris Bies, Robert Freedman, Immanuel |
author_sort | Pillai, Nikhil |
collection | PubMed |
description | Bridging fundamental approaches to model optimization for pharmacometricians, systems pharmacologists and statisticians is a critical issue. These fields rely primarily on Maximum Likelihood and Extended Least Squares metrics with iterative estimation of parameters. Our research combines adaptive chaos synchronization and grid search to estimate physiological and pharmacological systems with emergent properties by exploring deterministic methods that are more appropriate and have potentially superior performance than classical numerical approaches, which minimize the sum of squares or maximize the likelihood. We illustrate these issues with an established model of cortisol in human with nonlinear dynamics. The model describes cortisol kinetics over time, including its chaotic oscillations, by a delay differential equation. We demonstrate that chaos synchronization helps to avoid the tendency of the gradient-based optimization algorithms to end up in a local minimum. The subsequent analysis illustrates that the hybrid adaptive chaos synchronization for estimation of linear parameters with coarse-to-fine grid search for optimal values of non-linear parameters can be applied iteratively to accurately estimate parameters and effectively track trajectories for a wide class of noisy chaotic systems. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10928-019-09629-4) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-6491657 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-64916572019-05-17 Estimating parameters of nonlinear dynamic systems in pharmacology using chaos synchronization and grid search Pillai, Nikhil Schwartz, Sorell L. Ho, Thang Dokoumetzidis, Aris Bies, Robert Freedman, Immanuel J Pharmacokinet Pharmacodyn Original Paper Bridging fundamental approaches to model optimization for pharmacometricians, systems pharmacologists and statisticians is a critical issue. These fields rely primarily on Maximum Likelihood and Extended Least Squares metrics with iterative estimation of parameters. Our research combines adaptive chaos synchronization and grid search to estimate physiological and pharmacological systems with emergent properties by exploring deterministic methods that are more appropriate and have potentially superior performance than classical numerical approaches, which minimize the sum of squares or maximize the likelihood. We illustrate these issues with an established model of cortisol in human with nonlinear dynamics. The model describes cortisol kinetics over time, including its chaotic oscillations, by a delay differential equation. We demonstrate that chaos synchronization helps to avoid the tendency of the gradient-based optimization algorithms to end up in a local minimum. The subsequent analysis illustrates that the hybrid adaptive chaos synchronization for estimation of linear parameters with coarse-to-fine grid search for optimal values of non-linear parameters can be applied iteratively to accurately estimate parameters and effectively track trajectories for a wide class of noisy chaotic systems. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10928-019-09629-4) contains supplementary material, which is available to authorized users. Springer US 2019-03-30 2019 /pmc/articles/PMC6491657/ /pubmed/30929120 http://dx.doi.org/10.1007/s10928-019-09629-4 Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Original Paper Pillai, Nikhil Schwartz, Sorell L. Ho, Thang Dokoumetzidis, Aris Bies, Robert Freedman, Immanuel Estimating parameters of nonlinear dynamic systems in pharmacology using chaos synchronization and grid search |
title | Estimating parameters of nonlinear dynamic systems in pharmacology using chaos synchronization and grid search |
title_full | Estimating parameters of nonlinear dynamic systems in pharmacology using chaos synchronization and grid search |
title_fullStr | Estimating parameters of nonlinear dynamic systems in pharmacology using chaos synchronization and grid search |
title_full_unstemmed | Estimating parameters of nonlinear dynamic systems in pharmacology using chaos synchronization and grid search |
title_short | Estimating parameters of nonlinear dynamic systems in pharmacology using chaos synchronization and grid search |
title_sort | estimating parameters of nonlinear dynamic systems in pharmacology using chaos synchronization and grid search |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6491657/ https://www.ncbi.nlm.nih.gov/pubmed/30929120 http://dx.doi.org/10.1007/s10928-019-09629-4 |
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