Cargando…

Estimating parameters of nonlinear dynamic systems in pharmacology using chaos synchronization and grid search

Bridging fundamental approaches to model optimization for pharmacometricians, systems pharmacologists and statisticians is a critical issue. These fields rely primarily on Maximum Likelihood and Extended Least Squares metrics with iterative estimation of parameters. Our research combines adaptive ch...

Descripción completa

Detalles Bibliográficos
Autores principales: Pillai, Nikhil, Schwartz, Sorell L., Ho, Thang, Dokoumetzidis, Aris, Bies, Robert, Freedman, Immanuel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6491657/
https://www.ncbi.nlm.nih.gov/pubmed/30929120
http://dx.doi.org/10.1007/s10928-019-09629-4
_version_ 1783414985161965568
author Pillai, Nikhil
Schwartz, Sorell L.
Ho, Thang
Dokoumetzidis, Aris
Bies, Robert
Freedman, Immanuel
author_facet Pillai, Nikhil
Schwartz, Sorell L.
Ho, Thang
Dokoumetzidis, Aris
Bies, Robert
Freedman, Immanuel
author_sort Pillai, Nikhil
collection PubMed
description Bridging fundamental approaches to model optimization for pharmacometricians, systems pharmacologists and statisticians is a critical issue. These fields rely primarily on Maximum Likelihood and Extended Least Squares metrics with iterative estimation of parameters. Our research combines adaptive chaos synchronization and grid search to estimate physiological and pharmacological systems with emergent properties by exploring deterministic methods that are more appropriate and have potentially superior performance than classical numerical approaches, which minimize the sum of squares or maximize the likelihood. We illustrate these issues with an established model of cortisol in human with nonlinear dynamics. The model describes cortisol kinetics over time, including its chaotic oscillations, by a delay differential equation. We demonstrate that chaos synchronization helps to avoid the tendency of the gradient-based optimization algorithms to end up in a local minimum. The subsequent analysis illustrates that the hybrid adaptive chaos synchronization for estimation of linear parameters with coarse-to-fine grid search for optimal values of non-linear parameters can be applied iteratively to accurately estimate parameters and effectively track trajectories for a wide class of noisy chaotic systems. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10928-019-09629-4) contains supplementary material, which is available to authorized users.
format Online
Article
Text
id pubmed-6491657
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Springer US
record_format MEDLINE/PubMed
spelling pubmed-64916572019-05-17 Estimating parameters of nonlinear dynamic systems in pharmacology using chaos synchronization and grid search Pillai, Nikhil Schwartz, Sorell L. Ho, Thang Dokoumetzidis, Aris Bies, Robert Freedman, Immanuel J Pharmacokinet Pharmacodyn Original Paper Bridging fundamental approaches to model optimization for pharmacometricians, systems pharmacologists and statisticians is a critical issue. These fields rely primarily on Maximum Likelihood and Extended Least Squares metrics with iterative estimation of parameters. Our research combines adaptive chaos synchronization and grid search to estimate physiological and pharmacological systems with emergent properties by exploring deterministic methods that are more appropriate and have potentially superior performance than classical numerical approaches, which minimize the sum of squares or maximize the likelihood. We illustrate these issues with an established model of cortisol in human with nonlinear dynamics. The model describes cortisol kinetics over time, including its chaotic oscillations, by a delay differential equation. We demonstrate that chaos synchronization helps to avoid the tendency of the gradient-based optimization algorithms to end up in a local minimum. The subsequent analysis illustrates that the hybrid adaptive chaos synchronization for estimation of linear parameters with coarse-to-fine grid search for optimal values of non-linear parameters can be applied iteratively to accurately estimate parameters and effectively track trajectories for a wide class of noisy chaotic systems. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10928-019-09629-4) contains supplementary material, which is available to authorized users. Springer US 2019-03-30 2019 /pmc/articles/PMC6491657/ /pubmed/30929120 http://dx.doi.org/10.1007/s10928-019-09629-4 Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Original Paper
Pillai, Nikhil
Schwartz, Sorell L.
Ho, Thang
Dokoumetzidis, Aris
Bies, Robert
Freedman, Immanuel
Estimating parameters of nonlinear dynamic systems in pharmacology using chaos synchronization and grid search
title Estimating parameters of nonlinear dynamic systems in pharmacology using chaos synchronization and grid search
title_full Estimating parameters of nonlinear dynamic systems in pharmacology using chaos synchronization and grid search
title_fullStr Estimating parameters of nonlinear dynamic systems in pharmacology using chaos synchronization and grid search
title_full_unstemmed Estimating parameters of nonlinear dynamic systems in pharmacology using chaos synchronization and grid search
title_short Estimating parameters of nonlinear dynamic systems in pharmacology using chaos synchronization and grid search
title_sort estimating parameters of nonlinear dynamic systems in pharmacology using chaos synchronization and grid search
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6491657/
https://www.ncbi.nlm.nih.gov/pubmed/30929120
http://dx.doi.org/10.1007/s10928-019-09629-4
work_keys_str_mv AT pillainikhil estimatingparametersofnonlineardynamicsystemsinpharmacologyusingchaossynchronizationandgridsearch
AT schwartzsorelll estimatingparametersofnonlineardynamicsystemsinpharmacologyusingchaossynchronizationandgridsearch
AT hothang estimatingparametersofnonlineardynamicsystemsinpharmacologyusingchaossynchronizationandgridsearch
AT dokoumetzidisaris estimatingparametersofnonlineardynamicsystemsinpharmacologyusingchaossynchronizationandgridsearch
AT biesrobert estimatingparametersofnonlineardynamicsystemsinpharmacologyusingchaossynchronizationandgridsearch
AT freedmanimmanuel estimatingparametersofnonlineardynamicsystemsinpharmacologyusingchaossynchronizationandgridsearch