Cargando…

Modulation of the helical properties of DNA: next-to-nearest neighbour effects and beyond

We used extensive molecular dynamics simulations to study the structural and dynamic properties of the central d(TpA) step in the highly polymorphic d(CpTpApG) tetranucleotide. Contrary to the assumption of the dinucleotide-model and its nearest neighbours (tetranucleotide-model), the properties of...

Descripción completa

Detalles Bibliográficos
Autores principales:	Balaceanu, Alexandra, Buitrago, Diana, Walther, Jürgen, Hospital, Adam, Dans, Pablo D, Orozco, Modesto
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2019
Materias:	Computational Biology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6511876/ https://www.ncbi.nlm.nih.gov/pubmed/30957854 http://dx.doi.org/10.1093/nar/gkz255

Ejemplares similares

The static and dynamic structural heterogeneities of B-DNA: extending Calladine–Dickerson rules
por: Dans, Pablo D, et al.
Publicado: (2019)

Allosterism and signal transfer in DNA
por: Balaceanu, Alexandra, et al.
Publicado: (2018)

A multi-modal coarse grained model of DNA flexibility mappable to the atomistic level
por: Walther, Jürgen, et al.
Publicado: (2020)

Exploring polymorphisms in B-DNA helical conformations
por: Dans, Pablo D., et al.
Publicado: (2012)

Improving RNA nearest neighbor parameters for helices by going beyond the two-state model
por: Spasic, Aleksandar, et al.
Publicado: (2018)

Long-timescale dynamics of the Drew–Dickerson dodecamer
por: Dans, Pablo D., et al.
Publicado: (2016)

Nearest-neighbour transition-state analysis for nucleic acid kinetics
por: Rejali, Nick A, et al.
Publicado: (2021)

How accurate are accurate force-fields for B-DNA?
por: Dans, Pablo D., et al.
Publicado: (2017)

Nearest-neighbour clusters as a novel technique for assessing group associations
por: Rands, Sean A.
Publicado: (2015)

Nonlocal synchronization in nearest neighbour coupled oscillators
por: El-Nashar, H F, et al.
Publicado: (2002)

The Effect of Next-Nearest Neighbour Hopping in the One, Two, and Three Dimensional Holstein Model
por: Chandler, Carl J., et al.
Publicado: (2016)

Unraveling the sequence-dependent polymorphic behavior of d(CpG) steps in B-DNA
por: Dans, Pablo Daniel, et al.
Publicado: (2014)

Black-headed gulls synchronise their activity with their nearest neighbours
por: Evans, Madeleine H. R., et al.
Publicado: (2018)

An Occupancy Mapping Method Based on K-Nearest Neighbours
por: Miao, Yu, et al.
Publicado: (2021)

Nearest-Neighbour and Non-Nearest-Neighbour Non-Covalent Interactions between Substituents in the Aromatic Systems: Experimental and Theoretical Investigation of Functionally Substituted Benzophenones
por: Samarov, Artemiy A., et al.
Publicado: (2022)

Nucleosome Dynamics: a new tool for the dynamic analysis of nucleosome positioning
por: Buitrago, Diana, et al.
Publicado: (2019)

A study of actions with next-to-nearest neighbour interactions in four-dimensional Z$_{2}$ gauge theory
por: Bhanot, G V, et al.
Publicado: (1983)

Quantum and Quantum-Inspired Stereographic K Nearest-Neighbour Clustering
por: Viladomat Jasso, Alonso, et al.
Publicado: (2023)

Nearest Neighbour Node Deployment Algorithm for Mobile Sensor Networks †
por: Ghahroudi, Mahsa Sadeghi, et al.
Publicado: (2023)

Correlated motions in DNA: beyond base-pair step models of DNA flexibility
por: López-Güell, Kim, et al.
Publicado: (2023)

Love Thy Neighbour: Automatic Animal Behavioural Classification of Acceleration Data Using the K-Nearest Neighbour Algorithm
por: Bidder, Owen R., et al.
Publicado: (2014)

Phase correlation and clustering of a nearest neighbour coupled oscillators system
por: Ei-Nashar, H F
Publicado: (2002)

Phase correlation and clustering of a nearest neighbour coupled oscillators system
por: El-Nashar, H F
Publicado: (2002)

Nearest-Neighbour Interaction from an Abelian Symmetry and Deviations from Hermiticity
por: Branco, G C, et al.
Publicado: (2010)

Determining the location and nearest neighbours of aluminium in zeolites with atom probe tomography
por: Perea, Daniel E., et al.
Publicado: (2015)

Genome scans for selection and introgression based on k‐nearest neighbour techniques
por: Pfeifer, Bastian, et al.
Publicado: (2020)

Computing nearest neighbour interchange distances between ranked phylogenetic trees
por: Collienne, Lena, et al.
Publicado: (2021)

On the order of the phase transition in the 3-d 3-state Potts model with anti-ferromagnetic next-to-nearest neighbour coupling
por: Gavai, R V, et al.
Publicado: (1989)

Monte Carlo study of SU(3) gauge theory with next-to-nearest neighbour interactions on a 12$^{4}$ lattice
por: De Forcrand, Philippe, et al.
Publicado: (1984)

Predictions and analyses of RNA nearest neighbor parameters for modified nucleotides
por: Hopfinger, Melissa C, et al.
Publicado: (2020)

Bees do not use nearest-neighbour rules for optimization of multi-location routes
por: Lihoreau, Mathieu, et al.
Publicado: (2012)

Nearest-neighbour resonating valence bonds in YbMgGaO(4)
por: Li, Yuesheng, et al.
Publicado: (2017)

Weighted nearest neighbours-based control group selection method for observational studies
por: Szekér, Szabolcs, et al.
Publicado: (2020)

A Novel Test for Independence Derived from an Exact Distribution of ith Nearest Neighbours
por: Dümcke, Sebastian, et al.
Publicado: (2014)

Automated identification of Monogeneans using digital image processing and K-nearest neighbour approaches
por: Yousef Kalafi, Elham, et al.
Publicado: (2016)

Automatic Outcome in Manual Dexterity Assessment Using Colour Segmentation and Nearest Neighbour Classifier
por: Oña, Edwin Daniel, et al.
Publicado: (2018)

Efficient technique of microarray missing data imputation using clustering and weighted nearest neighbour
por: Dubey, Aditya, et al.
Publicado: (2021)

PARMBSC1: A REFINED FORCE-FIELD FOR DNA SIMULATIONS
por: Ivani, Ivan, et al.
Publicado: (2015)

Use of the K-Nearest Neighbour Classifier in Wear Condition Classification of a Positive Displacement Pump
por: Konieczny, Jarosław, et al.
Publicado: (2021)

The structural impact of DNA mismatches
por: Rossetti, Giulia, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_k4uknik0f8fsrn9bhbr7pcrrko