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Inter-outbreak stability reflects the size of the susceptible pool and forecasts magnitudes of seasonal epidemics

For dengue fever and other seasonal epidemics we show how the stability of the preceding inter-outbreak period can predict subsequent total outbreak magnitude, and that a feasible stability metric can be computed from incidence data alone. As an observable of a dynamical system, incidence data conta...

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Autores principales: Rypdal, Martin, Sugihara, George
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6542824/
https://www.ncbi.nlm.nih.gov/pubmed/31147545
http://dx.doi.org/10.1038/s41467-019-10099-y
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author Rypdal, Martin
Sugihara, George
author_facet Rypdal, Martin
Sugihara, George
author_sort Rypdal, Martin
collection PubMed
description For dengue fever and other seasonal epidemics we show how the stability of the preceding inter-outbreak period can predict subsequent total outbreak magnitude, and that a feasible stability metric can be computed from incidence data alone. As an observable of a dynamical system, incidence data contains information about the underlying mechanisms: climatic drivers, changing serotype pools, the ecology of the vector populations, and evolving viral strains. We present mathematical arguments to suggest a connection between stability measured in incidence data during the inter-outbreak period and the size of the effective susceptible population. The method is illustrated with an analysis of dengue incidence in San Juan, Puerto Rico, where forecasts can be made as early as three to four months ahead of an outbreak. These results have immediate significance for public health planning, and can be used in combination with existing forecasting methods and more comprehensive dengue models.
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spelling pubmed-65428242019-06-03 Inter-outbreak stability reflects the size of the susceptible pool and forecasts magnitudes of seasonal epidemics Rypdal, Martin Sugihara, George Nat Commun Article For dengue fever and other seasonal epidemics we show how the stability of the preceding inter-outbreak period can predict subsequent total outbreak magnitude, and that a feasible stability metric can be computed from incidence data alone. As an observable of a dynamical system, incidence data contains information about the underlying mechanisms: climatic drivers, changing serotype pools, the ecology of the vector populations, and evolving viral strains. We present mathematical arguments to suggest a connection between stability measured in incidence data during the inter-outbreak period and the size of the effective susceptible population. The method is illustrated with an analysis of dengue incidence in San Juan, Puerto Rico, where forecasts can be made as early as three to four months ahead of an outbreak. These results have immediate significance for public health planning, and can be used in combination with existing forecasting methods and more comprehensive dengue models. Nature Publishing Group UK 2019-05-30 /pmc/articles/PMC6542824/ /pubmed/31147545 http://dx.doi.org/10.1038/s41467-019-10099-y Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Rypdal, Martin
Sugihara, George
Inter-outbreak stability reflects the size of the susceptible pool and forecasts magnitudes of seasonal epidemics
title Inter-outbreak stability reflects the size of the susceptible pool and forecasts magnitudes of seasonal epidemics
title_full Inter-outbreak stability reflects the size of the susceptible pool and forecasts magnitudes of seasonal epidemics
title_fullStr Inter-outbreak stability reflects the size of the susceptible pool and forecasts magnitudes of seasonal epidemics
title_full_unstemmed Inter-outbreak stability reflects the size of the susceptible pool and forecasts magnitudes of seasonal epidemics
title_short Inter-outbreak stability reflects the size of the susceptible pool and forecasts magnitudes of seasonal epidemics
title_sort inter-outbreak stability reflects the size of the susceptible pool and forecasts magnitudes of seasonal epidemics
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6542824/
https://www.ncbi.nlm.nih.gov/pubmed/31147545
http://dx.doi.org/10.1038/s41467-019-10099-y
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