ConFindr: rapid detection of intraspecies and cross-species contamination in bacterial whole-genome sequence data

Whole-genome sequencing (WGS) of bacterial pathogens is currently widely used to support public-health investigations. The ability to assess WGS data quality is critical to underpin the reliability of downstream analyses. Sequence contamination is a quality issue that could potentially impact WGS-ba...

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Detalles Bibliográficos
Autores principales: Low, Andrew J., Koziol, Adam G., Manninger, Paul A., Blais, Burton, Carrillo, Catherine D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2019
Materias:
Bioinformatics
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6546082/
https://www.ncbi.nlm.nih.gov/pubmed/31183253
http://dx.doi.org/10.7717/peerj.6995

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6546082/
https://www.ncbi.nlm.nih.gov/pubmed/31183253
http://dx.doi.org/10.7717/peerj.6995

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