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Regions of homozygosity as risk factors for multiple myeloma

Genomic regions of homozygosity (ROH), detectable in outbred populations, have been implicated as determinants of inherited risk. To examine whether ROH is associated with risk of multiple myeloma (MM), we performed whole‐genome homozygosity analysis using single‐nucleotide polymorphism genotype dat...

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Detalles Bibliográficos
Autores principales: Went, Molly, Sud, Amit, Li, Ni, Johnson, David C., Mitchell, Jonathan S., Kaiser, Martin, Houlston, Richard S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6563058/
https://www.ncbi.nlm.nih.gov/pubmed/30768683
http://dx.doi.org/10.1111/ahg.12304
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author Went, Molly
Sud, Amit
Li, Ni
Johnson, David C.
Mitchell, Jonathan S.
Kaiser, Martin
Houlston, Richard S.
author_facet Went, Molly
Sud, Amit
Li, Ni
Johnson, David C.
Mitchell, Jonathan S.
Kaiser, Martin
Houlston, Richard S.
author_sort Went, Molly
collection PubMed
description Genomic regions of homozygosity (ROH), detectable in outbred populations, have been implicated as determinants of inherited risk. To examine whether ROH is associated with risk of multiple myeloma (MM), we performed whole‐genome homozygosity analysis using single‐nucleotide polymorphism genotype data from 2,282 MM cases and 5,197 controls, with replication in an additional 878 MM cases and 7,083 controls. Globally, the distribution of ROH between cases and controls was not significantly different. However, one ROH at chromosome 9q21, harboring the B‐cell transcription factor gene KLF9, showed evidence of a consistent association and may therefore warrant further investigation as a candidate risk factor for MM. Overall, our analysis provides little support for a homozygosity signature being a significant factor in MM risk.
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spelling pubmed-65630582019-06-17 Regions of homozygosity as risk factors for multiple myeloma Went, Molly Sud, Amit Li, Ni Johnson, David C. Mitchell, Jonathan S. Kaiser, Martin Houlston, Richard S. Ann Hum Genet Original Articles Genomic regions of homozygosity (ROH), detectable in outbred populations, have been implicated as determinants of inherited risk. To examine whether ROH is associated with risk of multiple myeloma (MM), we performed whole‐genome homozygosity analysis using single‐nucleotide polymorphism genotype data from 2,282 MM cases and 5,197 controls, with replication in an additional 878 MM cases and 7,083 controls. Globally, the distribution of ROH between cases and controls was not significantly different. However, one ROH at chromosome 9q21, harboring the B‐cell transcription factor gene KLF9, showed evidence of a consistent association and may therefore warrant further investigation as a candidate risk factor for MM. Overall, our analysis provides little support for a homozygosity signature being a significant factor in MM risk. John Wiley and Sons Inc. 2019-02-15 2019-07 /pmc/articles/PMC6563058/ /pubmed/30768683 http://dx.doi.org/10.1111/ahg.12304 Text en © 2019 The Authors. Annals of Human Genetics published by University College London (UCL) and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Went, Molly
Sud, Amit
Li, Ni
Johnson, David C.
Mitchell, Jonathan S.
Kaiser, Martin
Houlston, Richard S.
Regions of homozygosity as risk factors for multiple myeloma
title Regions of homozygosity as risk factors for multiple myeloma
title_full Regions of homozygosity as risk factors for multiple myeloma
title_fullStr Regions of homozygosity as risk factors for multiple myeloma
title_full_unstemmed Regions of homozygosity as risk factors for multiple myeloma
title_short Regions of homozygosity as risk factors for multiple myeloma
title_sort regions of homozygosity as risk factors for multiple myeloma
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6563058/
https://www.ncbi.nlm.nih.gov/pubmed/30768683
http://dx.doi.org/10.1111/ahg.12304
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