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Experiment stands corrected: accurate prediction of the aqueous pK(a) values of sulfonamide drugs using equilibrium bond lengths
We show here for the first time that strongly correlated linear relationships exist between equilibrium bond lengths of the sulfonamide group and aqueous pK(a) values. Models are constructed for three variants of the SO(2)NHR group: primary benzene sulfonamide derivatives (e.g. diuretic drugs furose...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Royal Society of Chemistry
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6601425/ https://www.ncbi.nlm.nih.gov/pubmed/31341593 http://dx.doi.org/10.1039/c9sc01818b |
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author | Caine, Beth A. Bronzato, Maddalena Popelier, Paul L. A. |
author_facet | Caine, Beth A. Bronzato, Maddalena Popelier, Paul L. A. |
author_sort | Caine, Beth A. |
collection | PubMed |
description | We show here for the first time that strongly correlated linear relationships exist between equilibrium bond lengths of the sulfonamide group and aqueous pK(a) values. Models are constructed for three variants of the SO(2)NHR group: primary benzene sulfonamide derivatives (e.g. diuretic drugs furosemide and hydrochlorothiazide), N-phenyl substituted 4-amino-N-phenylbenzenesulfonamide analogues (e.g. the sulfa antibiotic sulfadiazine) and phenylsulfonylureas (e.g. insulin secretagogue, glimepiride). In the context of these compounds, we present solutions to some of the more complex challenges in pK(a) prediction: (i) prediction for multiprotic compounds, (ii) predicting macroscopic values for compounds that tautomerize, and (iii) quantum chemical pK(a) prediction for compounds with more than 50 atoms. Using bond lengths as a powerful descriptor of ionization feasibility, we also identify that literature values for drug compounds celecoxib, glimepiride and glipizide are inaccurate. Our newly measured experimental values match our initial predictions to within 0.26 pK(a) units, whereas previous values were found to deviate by up to 1.68 pK(a) units. For glimepiride, our corrected value denotes a percentage of ionization at intracellular pH, which is only now in excellent agreement with its known therapeutic efficacy. We propose that linear relationships between bond lengths and pK(a) should emerge for any set of congeners, thus providing a powerful method of pK(a) prediction in instances where pK(a) data exist for close congeners, thereby obviating the need for thermodynamic cycles. |
format | Online Article Text |
id | pubmed-6601425 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-66014252019-07-24 Experiment stands corrected: accurate prediction of the aqueous pK(a) values of sulfonamide drugs using equilibrium bond lengths Caine, Beth A. Bronzato, Maddalena Popelier, Paul L. A. Chem Sci Chemistry We show here for the first time that strongly correlated linear relationships exist between equilibrium bond lengths of the sulfonamide group and aqueous pK(a) values. Models are constructed for three variants of the SO(2)NHR group: primary benzene sulfonamide derivatives (e.g. diuretic drugs furosemide and hydrochlorothiazide), N-phenyl substituted 4-amino-N-phenylbenzenesulfonamide analogues (e.g. the sulfa antibiotic sulfadiazine) and phenylsulfonylureas (e.g. insulin secretagogue, glimepiride). In the context of these compounds, we present solutions to some of the more complex challenges in pK(a) prediction: (i) prediction for multiprotic compounds, (ii) predicting macroscopic values for compounds that tautomerize, and (iii) quantum chemical pK(a) prediction for compounds with more than 50 atoms. Using bond lengths as a powerful descriptor of ionization feasibility, we also identify that literature values for drug compounds celecoxib, glimepiride and glipizide are inaccurate. Our newly measured experimental values match our initial predictions to within 0.26 pK(a) units, whereas previous values were found to deviate by up to 1.68 pK(a) units. For glimepiride, our corrected value denotes a percentage of ionization at intracellular pH, which is only now in excellent agreement with its known therapeutic efficacy. We propose that linear relationships between bond lengths and pK(a) should emerge for any set of congeners, thus providing a powerful method of pK(a) prediction in instances where pK(a) data exist for close congeners, thereby obviating the need for thermodynamic cycles. Royal Society of Chemistry 2019-05-29 /pmc/articles/PMC6601425/ /pubmed/31341593 http://dx.doi.org/10.1039/c9sc01818b Text en This journal is © The Royal Society of Chemistry 2019 https://creativecommons.org/licenses/by-nc/3.0/This article is freely available. This article is licensed under a Creative Commons Attribution Non Commercial 3.0 Unported Licence (CC BY-NC 3.0) |
spellingShingle | Chemistry Caine, Beth A. Bronzato, Maddalena Popelier, Paul L. A. Experiment stands corrected: accurate prediction of the aqueous pK(a) values of sulfonamide drugs using equilibrium bond lengths |
title | Experiment stands corrected: accurate prediction of the aqueous pK(a) values of sulfonamide drugs using equilibrium bond lengths
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title_full | Experiment stands corrected: accurate prediction of the aqueous pK(a) values of sulfonamide drugs using equilibrium bond lengths
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title_fullStr | Experiment stands corrected: accurate prediction of the aqueous pK(a) values of sulfonamide drugs using equilibrium bond lengths
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title_full_unstemmed | Experiment stands corrected: accurate prediction of the aqueous pK(a) values of sulfonamide drugs using equilibrium bond lengths
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title_short | Experiment stands corrected: accurate prediction of the aqueous pK(a) values of sulfonamide drugs using equilibrium bond lengths
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title_sort | experiment stands corrected: accurate prediction of the aqueous pk(a) values of sulfonamide drugs using equilibrium bond lengths |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6601425/ https://www.ncbi.nlm.nih.gov/pubmed/31341593 http://dx.doi.org/10.1039/c9sc01818b |
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