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Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization
PURPOSE: To develop and validate a classifier system for prediction of prostate cancer (PCa) Gleason score (GS) using radiomics and texture features of T(2)-weighted imaging (T(2)w), diffusion weighted imaging (DWI) acquired using high b values, and T(2)-mapping (T(2)). METHODS: T(2)w, DWI (12 b val...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6613688/ https://www.ncbi.nlm.nih.gov/pubmed/31283771 http://dx.doi.org/10.1371/journal.pone.0217702 |
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author | Toivonen, Jussi Montoya Perez, Ileana Movahedi, Parisa Merisaari, Harri Pesola, Marko Taimen, Pekka Boström, Peter J. Pohjankukka, Jonne Kiviniemi, Aida Pahikkala, Tapio Aronen, Hannu J. Jambor, Ivan |
author_facet | Toivonen, Jussi Montoya Perez, Ileana Movahedi, Parisa Merisaari, Harri Pesola, Marko Taimen, Pekka Boström, Peter J. Pohjankukka, Jonne Kiviniemi, Aida Pahikkala, Tapio Aronen, Hannu J. Jambor, Ivan |
author_sort | Toivonen, Jussi |
collection | PubMed |
description | PURPOSE: To develop and validate a classifier system for prediction of prostate cancer (PCa) Gleason score (GS) using radiomics and texture features of T(2)-weighted imaging (T(2)w), diffusion weighted imaging (DWI) acquired using high b values, and T(2)-mapping (T(2)). METHODS: T(2)w, DWI (12 b values, 0–2000 s/mm(2)), and T(2) data sets of 62 patients with histologically confirmed PCa were acquired at 3T using surface array coils. The DWI data sets were post-processed using monoexponential and kurtosis models, while T(2)w was standardized to a common scale. Local statistics and 8 different radiomics/texture descriptors were utilized at different configurations to extract a total of 7105 unique per-tumor features. Regularized logistic regression with implicit feature selection and leave pair out cross validation was used to discriminate tumors with 3+3 vs >3+3 GS. RESULTS: In total, 100 PCa lesions were analysed, of those 20 and 80 had GS of 3+3 and >3+3, respectively. The best model performance was obtained by selecting the top 1% features of T(2)w, ADC(m) and K with ROC AUC of 0.88 (95% CI of 0.82–0.95). Features from T(2) mapping provided little added value. The most useful texture features were based on the gray-level co-occurrence matrix, Gabor transform, and Zernike moments. CONCLUSION: Texture feature analysis of DWI, post-processed using monoexponential and kurtosis models, and T(2)w demonstrated good classification performance for GS of PCa. In multisequence setting, the optimal radiomics based texture extraction methods and parameters differed between different image types. |
format | Online Article Text |
id | pubmed-6613688 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-66136882019-07-23 Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization Toivonen, Jussi Montoya Perez, Ileana Movahedi, Parisa Merisaari, Harri Pesola, Marko Taimen, Pekka Boström, Peter J. Pohjankukka, Jonne Kiviniemi, Aida Pahikkala, Tapio Aronen, Hannu J. Jambor, Ivan PLoS One Research Article PURPOSE: To develop and validate a classifier system for prediction of prostate cancer (PCa) Gleason score (GS) using radiomics and texture features of T(2)-weighted imaging (T(2)w), diffusion weighted imaging (DWI) acquired using high b values, and T(2)-mapping (T(2)). METHODS: T(2)w, DWI (12 b values, 0–2000 s/mm(2)), and T(2) data sets of 62 patients with histologically confirmed PCa were acquired at 3T using surface array coils. The DWI data sets were post-processed using monoexponential and kurtosis models, while T(2)w was standardized to a common scale. Local statistics and 8 different radiomics/texture descriptors were utilized at different configurations to extract a total of 7105 unique per-tumor features. Regularized logistic regression with implicit feature selection and leave pair out cross validation was used to discriminate tumors with 3+3 vs >3+3 GS. RESULTS: In total, 100 PCa lesions were analysed, of those 20 and 80 had GS of 3+3 and >3+3, respectively. The best model performance was obtained by selecting the top 1% features of T(2)w, ADC(m) and K with ROC AUC of 0.88 (95% CI of 0.82–0.95). Features from T(2) mapping provided little added value. The most useful texture features were based on the gray-level co-occurrence matrix, Gabor transform, and Zernike moments. CONCLUSION: Texture feature analysis of DWI, post-processed using monoexponential and kurtosis models, and T(2)w demonstrated good classification performance for GS of PCa. In multisequence setting, the optimal radiomics based texture extraction methods and parameters differed between different image types. Public Library of Science 2019-07-08 /pmc/articles/PMC6613688/ /pubmed/31283771 http://dx.doi.org/10.1371/journal.pone.0217702 Text en © 2019 Toivonen et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Toivonen, Jussi Montoya Perez, Ileana Movahedi, Parisa Merisaari, Harri Pesola, Marko Taimen, Pekka Boström, Peter J. Pohjankukka, Jonne Kiviniemi, Aida Pahikkala, Tapio Aronen, Hannu J. Jambor, Ivan Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization |
title | Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization |
title_full | Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization |
title_fullStr | Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization |
title_full_unstemmed | Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization |
title_short | Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization |
title_sort | radiomics and machine learning of multisequence multiparametric prostate mri: towards improved non-invasive prostate cancer characterization |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6613688/ https://www.ncbi.nlm.nih.gov/pubmed/31283771 http://dx.doi.org/10.1371/journal.pone.0217702 |
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