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Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization

PURPOSE: To develop and validate a classifier system for prediction of prostate cancer (PCa) Gleason score (GS) using radiomics and texture features of T(2)-weighted imaging (T(2)w), diffusion weighted imaging (DWI) acquired using high b values, and T(2)-mapping (T(2)). METHODS: T(2)w, DWI (12 b val...

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Autores principales: Toivonen, Jussi, Montoya Perez, Ileana, Movahedi, Parisa, Merisaari, Harri, Pesola, Marko, Taimen, Pekka, Boström, Peter J., Pohjankukka, Jonne, Kiviniemi, Aida, Pahikkala, Tapio, Aronen, Hannu J., Jambor, Ivan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6613688/
https://www.ncbi.nlm.nih.gov/pubmed/31283771
http://dx.doi.org/10.1371/journal.pone.0217702
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author Toivonen, Jussi
Montoya Perez, Ileana
Movahedi, Parisa
Merisaari, Harri
Pesola, Marko
Taimen, Pekka
Boström, Peter J.
Pohjankukka, Jonne
Kiviniemi, Aida
Pahikkala, Tapio
Aronen, Hannu J.
Jambor, Ivan
author_facet Toivonen, Jussi
Montoya Perez, Ileana
Movahedi, Parisa
Merisaari, Harri
Pesola, Marko
Taimen, Pekka
Boström, Peter J.
Pohjankukka, Jonne
Kiviniemi, Aida
Pahikkala, Tapio
Aronen, Hannu J.
Jambor, Ivan
author_sort Toivonen, Jussi
collection PubMed
description PURPOSE: To develop and validate a classifier system for prediction of prostate cancer (PCa) Gleason score (GS) using radiomics and texture features of T(2)-weighted imaging (T(2)w), diffusion weighted imaging (DWI) acquired using high b values, and T(2)-mapping (T(2)). METHODS: T(2)w, DWI (12 b values, 0–2000 s/mm(2)), and T(2) data sets of 62 patients with histologically confirmed PCa were acquired at 3T using surface array coils. The DWI data sets were post-processed using monoexponential and kurtosis models, while T(2)w was standardized to a common scale. Local statistics and 8 different radiomics/texture descriptors were utilized at different configurations to extract a total of 7105 unique per-tumor features. Regularized logistic regression with implicit feature selection and leave pair out cross validation was used to discriminate tumors with 3+3 vs >3+3 GS. RESULTS: In total, 100 PCa lesions were analysed, of those 20 and 80 had GS of 3+3 and >3+3, respectively. The best model performance was obtained by selecting the top 1% features of T(2)w, ADC(m) and K with ROC AUC of 0.88 (95% CI of 0.82–0.95). Features from T(2) mapping provided little added value. The most useful texture features were based on the gray-level co-occurrence matrix, Gabor transform, and Zernike moments. CONCLUSION: Texture feature analysis of DWI, post-processed using monoexponential and kurtosis models, and T(2)w demonstrated good classification performance for GS of PCa. In multisequence setting, the optimal radiomics based texture extraction methods and parameters differed between different image types.
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spelling pubmed-66136882019-07-23 Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization Toivonen, Jussi Montoya Perez, Ileana Movahedi, Parisa Merisaari, Harri Pesola, Marko Taimen, Pekka Boström, Peter J. Pohjankukka, Jonne Kiviniemi, Aida Pahikkala, Tapio Aronen, Hannu J. Jambor, Ivan PLoS One Research Article PURPOSE: To develop and validate a classifier system for prediction of prostate cancer (PCa) Gleason score (GS) using radiomics and texture features of T(2)-weighted imaging (T(2)w), diffusion weighted imaging (DWI) acquired using high b values, and T(2)-mapping (T(2)). METHODS: T(2)w, DWI (12 b values, 0–2000 s/mm(2)), and T(2) data sets of 62 patients with histologically confirmed PCa were acquired at 3T using surface array coils. The DWI data sets were post-processed using monoexponential and kurtosis models, while T(2)w was standardized to a common scale. Local statistics and 8 different radiomics/texture descriptors were utilized at different configurations to extract a total of 7105 unique per-tumor features. Regularized logistic regression with implicit feature selection and leave pair out cross validation was used to discriminate tumors with 3+3 vs >3+3 GS. RESULTS: In total, 100 PCa lesions were analysed, of those 20 and 80 had GS of 3+3 and >3+3, respectively. The best model performance was obtained by selecting the top 1% features of T(2)w, ADC(m) and K with ROC AUC of 0.88 (95% CI of 0.82–0.95). Features from T(2) mapping provided little added value. The most useful texture features were based on the gray-level co-occurrence matrix, Gabor transform, and Zernike moments. CONCLUSION: Texture feature analysis of DWI, post-processed using monoexponential and kurtosis models, and T(2)w demonstrated good classification performance for GS of PCa. In multisequence setting, the optimal radiomics based texture extraction methods and parameters differed between different image types. Public Library of Science 2019-07-08 /pmc/articles/PMC6613688/ /pubmed/31283771 http://dx.doi.org/10.1371/journal.pone.0217702 Text en © 2019 Toivonen et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Toivonen, Jussi
Montoya Perez, Ileana
Movahedi, Parisa
Merisaari, Harri
Pesola, Marko
Taimen, Pekka
Boström, Peter J.
Pohjankukka, Jonne
Kiviniemi, Aida
Pahikkala, Tapio
Aronen, Hannu J.
Jambor, Ivan
Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization
title Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization
title_full Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization
title_fullStr Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization
title_full_unstemmed Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization
title_short Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization
title_sort radiomics and machine learning of multisequence multiparametric prostate mri: towards improved non-invasive prostate cancer characterization
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6613688/
https://www.ncbi.nlm.nih.gov/pubmed/31283771
http://dx.doi.org/10.1371/journal.pone.0217702
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