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Optimization of DNA Extraction from Individual Sand Flies for PCR Amplification
Numerous protocols have been published for extracting DNA from phlebotomines. Nevertheless, their small size is generally an issue in terms of yield, efficiency, and purity, for large-scale individual sand fly DNA extractions when using traditional methods. Even though this can be circumvented with...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6632178/ https://www.ncbi.nlm.nih.gov/pubmed/31164615 http://dx.doi.org/10.3390/mps2020036 |
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author | Caligiuri, Lorena G. Sandoval, Adolfo E. Miranda, Jose C. Pessoa, Felipe A. Santini, María S. Salomón, Oscar D. Secundino, Nagila F. C. McCarthy, Christina B. |
author_facet | Caligiuri, Lorena G. Sandoval, Adolfo E. Miranda, Jose C. Pessoa, Felipe A. Santini, María S. Salomón, Oscar D. Secundino, Nagila F. C. McCarthy, Christina B. |
author_sort | Caligiuri, Lorena G. |
collection | PubMed |
description | Numerous protocols have been published for extracting DNA from phlebotomines. Nevertheless, their small size is generally an issue in terms of yield, efficiency, and purity, for large-scale individual sand fly DNA extractions when using traditional methods. Even though this can be circumvented with commercial kits, these are generally cost-prohibitive for developing countries. We encountered these limitations when analyzing field-collected Lutzomyia spp. by polymerase chain reaction (PCR) and, for this reason, we evaluated various modifications on a previously published protocol, the most significant of which was a different lysis buffer that contained Ca(2+) (buffer TESCa). This ion protects proteinase K against autolysis, increases its thermal stability, and could have a regulatory function for its substrate-binding site. Individual sand fly DNA extraction success was confirmed by amplification reactions using internal control primers that amplify a fragment of the cacophony gene. To the best of our knowledge, this is the first time a lysis buffer containing Ca(2+) has been reported for the extraction of DNA from sand flies. |
format | Online Article Text |
id | pubmed-6632178 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-66321782019-08-19 Optimization of DNA Extraction from Individual Sand Flies for PCR Amplification Caligiuri, Lorena G. Sandoval, Adolfo E. Miranda, Jose C. Pessoa, Felipe A. Santini, María S. Salomón, Oscar D. Secundino, Nagila F. C. McCarthy, Christina B. Methods Protoc Protocol Numerous protocols have been published for extracting DNA from phlebotomines. Nevertheless, their small size is generally an issue in terms of yield, efficiency, and purity, for large-scale individual sand fly DNA extractions when using traditional methods. Even though this can be circumvented with commercial kits, these are generally cost-prohibitive for developing countries. We encountered these limitations when analyzing field-collected Lutzomyia spp. by polymerase chain reaction (PCR) and, for this reason, we evaluated various modifications on a previously published protocol, the most significant of which was a different lysis buffer that contained Ca(2+) (buffer TESCa). This ion protects proteinase K against autolysis, increases its thermal stability, and could have a regulatory function for its substrate-binding site. Individual sand fly DNA extraction success was confirmed by amplification reactions using internal control primers that amplify a fragment of the cacophony gene. To the best of our knowledge, this is the first time a lysis buffer containing Ca(2+) has been reported for the extraction of DNA from sand flies. MDPI 2019-05-07 /pmc/articles/PMC6632178/ /pubmed/31164615 http://dx.doi.org/10.3390/mps2020036 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Protocol Caligiuri, Lorena G. Sandoval, Adolfo E. Miranda, Jose C. Pessoa, Felipe A. Santini, María S. Salomón, Oscar D. Secundino, Nagila F. C. McCarthy, Christina B. Optimization of DNA Extraction from Individual Sand Flies for PCR Amplification |
title | Optimization of DNA Extraction from Individual Sand Flies for PCR Amplification |
title_full | Optimization of DNA Extraction from Individual Sand Flies for PCR Amplification |
title_fullStr | Optimization of DNA Extraction from Individual Sand Flies for PCR Amplification |
title_full_unstemmed | Optimization of DNA Extraction from Individual Sand Flies for PCR Amplification |
title_short | Optimization of DNA Extraction from Individual Sand Flies for PCR Amplification |
title_sort | optimization of dna extraction from individual sand flies for pcr amplification |
topic | Protocol |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6632178/ https://www.ncbi.nlm.nih.gov/pubmed/31164615 http://dx.doi.org/10.3390/mps2020036 |
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