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Establishment and equilibrium levels of deleterious mutations in large populations
Analytical and statistical stochastic approaches are used to model the dispersion of monogenic variants through large populations. These approaches are used to quantify the magnitude of the selective advantage of a monogenic heterozygous variant in the presence of a homozygous disadvantage. Dunbar’s...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6637196/ https://www.ncbi.nlm.nih.gov/pubmed/31316137 http://dx.doi.org/10.1038/s41598-019-46803-7 |
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author | Viljoen, Johan W. de Villiers, J. Pieter van Zyl, Augustinus J. Mezzavilla, Massimo Pepper, Michael S. |
author_facet | Viljoen, Johan W. de Villiers, J. Pieter van Zyl, Augustinus J. Mezzavilla, Massimo Pepper, Michael S. |
author_sort | Viljoen, Johan W. |
collection | PubMed |
description | Analytical and statistical stochastic approaches are used to model the dispersion of monogenic variants through large populations. These approaches are used to quantify the magnitude of the selective advantage of a monogenic heterozygous variant in the presence of a homozygous disadvantage. Dunbar’s results regarding the cognitive upper limit of the number of stable social relationships that humans can maintain are used to determine a realistic effective community size from which an individual can select mates. By envisaging human community structure as a network where social proximity rather than physical geography predominates, a significant simplification is achieved, implicitly accounting for the effects of migration and consanguinity, and with population structure and genetic drift becoming emergent features of the model. Effective community size has a dramatic effect on the probability of establishing beneficial alleles. It also affects the eventual equilibrium values that are reached in the case of variants conferring a heterozygous selective advantage, but a homozygous disadvantage, as in the case of cystic fibrosis and sickle cell disease. The magnitude of this selective advantage can then be estimated based on observed occurrence levels of a specific allele in a population, without requiring prior information regarding its phenotypic manifestation. |
format | Online Article Text |
id | pubmed-6637196 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-66371962019-07-25 Establishment and equilibrium levels of deleterious mutations in large populations Viljoen, Johan W. de Villiers, J. Pieter van Zyl, Augustinus J. Mezzavilla, Massimo Pepper, Michael S. Sci Rep Article Analytical and statistical stochastic approaches are used to model the dispersion of monogenic variants through large populations. These approaches are used to quantify the magnitude of the selective advantage of a monogenic heterozygous variant in the presence of a homozygous disadvantage. Dunbar’s results regarding the cognitive upper limit of the number of stable social relationships that humans can maintain are used to determine a realistic effective community size from which an individual can select mates. By envisaging human community structure as a network where social proximity rather than physical geography predominates, a significant simplification is achieved, implicitly accounting for the effects of migration and consanguinity, and with population structure and genetic drift becoming emergent features of the model. Effective community size has a dramatic effect on the probability of establishing beneficial alleles. It also affects the eventual equilibrium values that are reached in the case of variants conferring a heterozygous selective advantage, but a homozygous disadvantage, as in the case of cystic fibrosis and sickle cell disease. The magnitude of this selective advantage can then be estimated based on observed occurrence levels of a specific allele in a population, without requiring prior information regarding its phenotypic manifestation. Nature Publishing Group UK 2019-07-17 /pmc/articles/PMC6637196/ /pubmed/31316137 http://dx.doi.org/10.1038/s41598-019-46803-7 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Viljoen, Johan W. de Villiers, J. Pieter van Zyl, Augustinus J. Mezzavilla, Massimo Pepper, Michael S. Establishment and equilibrium levels of deleterious mutations in large populations |
title | Establishment and equilibrium levels of deleterious mutations in large populations |
title_full | Establishment and equilibrium levels of deleterious mutations in large populations |
title_fullStr | Establishment and equilibrium levels of deleterious mutations in large populations |
title_full_unstemmed | Establishment and equilibrium levels of deleterious mutations in large populations |
title_short | Establishment and equilibrium levels of deleterious mutations in large populations |
title_sort | establishment and equilibrium levels of deleterious mutations in large populations |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6637196/ https://www.ncbi.nlm.nih.gov/pubmed/31316137 http://dx.doi.org/10.1038/s41598-019-46803-7 |
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