Cargando…

Effect of Weakly Interacting Cosolutes on Lysozyme Conformations

[Image: see text] Exposure of a protein to cosolutes, like denaturants, changes its folding equilibrium. To determine the ensemble of protein conformations at equilibrium, in the presence of weakly interacting cosolutes, we present a two-stage analysis of solution X-ray scattering data. In the first...

Descripción completa

Detalles Bibliográficos
Autores principales: Levartovsky, Yehonatan, Shemesh, Asaf, Asor, Roi, Raviv, Uri
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2018
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6643829/
https://www.ncbi.nlm.nih.gov/pubmed/31458260
http://dx.doi.org/10.1021/acsomega.8b01289
_version_ 1783437168095526912
author Levartovsky, Yehonatan
Shemesh, Asaf
Asor, Roi
Raviv, Uri
author_facet Levartovsky, Yehonatan
Shemesh, Asaf
Asor, Roi
Raviv, Uri
author_sort Levartovsky, Yehonatan
collection PubMed
description [Image: see text] Exposure of a protein to cosolutes, like denaturants, changes its folding equilibrium. To determine the ensemble of protein conformations at equilibrium, in the presence of weakly interacting cosolutes, we present a two-stage analysis of solution X-ray scattering data. In the first stage, Guinier analysis and Kratky plot revealed information about the compactness and flexibility of the protein. In the second stage, elastic network contact model and coarse-grained normal mode analysis were used to generate an ensemble of conformations. The scattering curves of the conformations were computed and fitted to the measured scattering curves to get insights into the dominating folding states at equilibrium. Urea and guanidine hydrochloride (GuHCl) behaved as preferentially included weakly interacting cosolutes and induced denaturation of hen egg-white lysozyme, which served as our test case. The computed models adequately fit the data and gave ensembles of conformations that were consistent with our measurements. The analysis suggests that in the presence of urea, lysozyme retained its compactness and assumed molten globule characteristics, whereas in the presence of GuHCl lysozyme adopted random coiled conformations. Interestingly, no equilibrium intermediate states were observed in both urea and GuHCl.
format Online
Article
Text
id pubmed-6643829
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-66438292019-08-27 Effect of Weakly Interacting Cosolutes on Lysozyme Conformations Levartovsky, Yehonatan Shemesh, Asaf Asor, Roi Raviv, Uri ACS Omega [Image: see text] Exposure of a protein to cosolutes, like denaturants, changes its folding equilibrium. To determine the ensemble of protein conformations at equilibrium, in the presence of weakly interacting cosolutes, we present a two-stage analysis of solution X-ray scattering data. In the first stage, Guinier analysis and Kratky plot revealed information about the compactness and flexibility of the protein. In the second stage, elastic network contact model and coarse-grained normal mode analysis were used to generate an ensemble of conformations. The scattering curves of the conformations were computed and fitted to the measured scattering curves to get insights into the dominating folding states at equilibrium. Urea and guanidine hydrochloride (GuHCl) behaved as preferentially included weakly interacting cosolutes and induced denaturation of hen egg-white lysozyme, which served as our test case. The computed models adequately fit the data and gave ensembles of conformations that were consistent with our measurements. The analysis suggests that in the presence of urea, lysozyme retained its compactness and assumed molten globule characteristics, whereas in the presence of GuHCl lysozyme adopted random coiled conformations. Interestingly, no equilibrium intermediate states were observed in both urea and GuHCl. American Chemical Society 2018-11-29 /pmc/articles/PMC6643829/ /pubmed/31458260 http://dx.doi.org/10.1021/acsomega.8b01289 Text en Copyright © 2018 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes.
spellingShingle Levartovsky, Yehonatan
Shemesh, Asaf
Asor, Roi
Raviv, Uri
Effect of Weakly Interacting Cosolutes on Lysozyme Conformations
title Effect of Weakly Interacting Cosolutes on Lysozyme Conformations
title_full Effect of Weakly Interacting Cosolutes on Lysozyme Conformations
title_fullStr Effect of Weakly Interacting Cosolutes on Lysozyme Conformations
title_full_unstemmed Effect of Weakly Interacting Cosolutes on Lysozyme Conformations
title_short Effect of Weakly Interacting Cosolutes on Lysozyme Conformations
title_sort effect of weakly interacting cosolutes on lysozyme conformations
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6643829/
https://www.ncbi.nlm.nih.gov/pubmed/31458260
http://dx.doi.org/10.1021/acsomega.8b01289
work_keys_str_mv AT levartovskyyehonatan effectofweaklyinteractingcosolutesonlysozymeconformations
AT shemeshasaf effectofweaklyinteractingcosolutesonlysozymeconformations
AT asorroi effectofweaklyinteractingcosolutesonlysozymeconformations
AT ravivuri effectofweaklyinteractingcosolutesonlysozymeconformations