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Effect of Weakly Interacting Cosolutes on Lysozyme Conformations
[Image: see text] Exposure of a protein to cosolutes, like denaturants, changes its folding equilibrium. To determine the ensemble of protein conformations at equilibrium, in the presence of weakly interacting cosolutes, we present a two-stage analysis of solution X-ray scattering data. In the first...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2018
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6643829/ https://www.ncbi.nlm.nih.gov/pubmed/31458260 http://dx.doi.org/10.1021/acsomega.8b01289 |
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author | Levartovsky, Yehonatan Shemesh, Asaf Asor, Roi Raviv, Uri |
author_facet | Levartovsky, Yehonatan Shemesh, Asaf Asor, Roi Raviv, Uri |
author_sort | Levartovsky, Yehonatan |
collection | PubMed |
description | [Image: see text] Exposure of a protein to cosolutes, like denaturants, changes its folding equilibrium. To determine the ensemble of protein conformations at equilibrium, in the presence of weakly interacting cosolutes, we present a two-stage analysis of solution X-ray scattering data. In the first stage, Guinier analysis and Kratky plot revealed information about the compactness and flexibility of the protein. In the second stage, elastic network contact model and coarse-grained normal mode analysis were used to generate an ensemble of conformations. The scattering curves of the conformations were computed and fitted to the measured scattering curves to get insights into the dominating folding states at equilibrium. Urea and guanidine hydrochloride (GuHCl) behaved as preferentially included weakly interacting cosolutes and induced denaturation of hen egg-white lysozyme, which served as our test case. The computed models adequately fit the data and gave ensembles of conformations that were consistent with our measurements. The analysis suggests that in the presence of urea, lysozyme retained its compactness and assumed molten globule characteristics, whereas in the presence of GuHCl lysozyme adopted random coiled conformations. Interestingly, no equilibrium intermediate states were observed in both urea and GuHCl. |
format | Online Article Text |
id | pubmed-6643829 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-66438292019-08-27 Effect of Weakly Interacting Cosolutes on Lysozyme Conformations Levartovsky, Yehonatan Shemesh, Asaf Asor, Roi Raviv, Uri ACS Omega [Image: see text] Exposure of a protein to cosolutes, like denaturants, changes its folding equilibrium. To determine the ensemble of protein conformations at equilibrium, in the presence of weakly interacting cosolutes, we present a two-stage analysis of solution X-ray scattering data. In the first stage, Guinier analysis and Kratky plot revealed information about the compactness and flexibility of the protein. In the second stage, elastic network contact model and coarse-grained normal mode analysis were used to generate an ensemble of conformations. The scattering curves of the conformations were computed and fitted to the measured scattering curves to get insights into the dominating folding states at equilibrium. Urea and guanidine hydrochloride (GuHCl) behaved as preferentially included weakly interacting cosolutes and induced denaturation of hen egg-white lysozyme, which served as our test case. The computed models adequately fit the data and gave ensembles of conformations that were consistent with our measurements. The analysis suggests that in the presence of urea, lysozyme retained its compactness and assumed molten globule characteristics, whereas in the presence of GuHCl lysozyme adopted random coiled conformations. Interestingly, no equilibrium intermediate states were observed in both urea and GuHCl. American Chemical Society 2018-11-29 /pmc/articles/PMC6643829/ /pubmed/31458260 http://dx.doi.org/10.1021/acsomega.8b01289 Text en Copyright © 2018 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes. |
spellingShingle | Levartovsky, Yehonatan Shemesh, Asaf Asor, Roi Raviv, Uri Effect of Weakly Interacting Cosolutes on Lysozyme Conformations |
title | Effect of Weakly Interacting Cosolutes on Lysozyme Conformations |
title_full | Effect of Weakly Interacting Cosolutes on Lysozyme Conformations |
title_fullStr | Effect of Weakly Interacting Cosolutes on Lysozyme Conformations |
title_full_unstemmed | Effect of Weakly Interacting Cosolutes on Lysozyme Conformations |
title_short | Effect of Weakly Interacting Cosolutes on Lysozyme Conformations |
title_sort | effect of weakly interacting cosolutes on lysozyme conformations |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6643829/ https://www.ncbi.nlm.nih.gov/pubmed/31458260 http://dx.doi.org/10.1021/acsomega.8b01289 |
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