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Systems biology and network pharmacology of frailty reveal novel epigenetic targets and mechanisms
Frailty is an age-associated condition, characterized by an inappropriate response to stress that results in a higher frequency of adverse outcomes (e.g., mortality, institutionalization and disability). Some light has been shed over its genetic background, but this is still a matter of debate. In t...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6646318/ https://www.ncbi.nlm.nih.gov/pubmed/31332237 http://dx.doi.org/10.1038/s41598-019-47087-7 |
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author | Gomez-Verjan, J. C. Ramírez-Aldana, R. Pérez-Zepeda, M. U. Quiroz-Baez, R. Luna-López, A. Gutierrez Robledo, L. M. |
author_facet | Gomez-Verjan, J. C. Ramírez-Aldana, R. Pérez-Zepeda, M. U. Quiroz-Baez, R. Luna-López, A. Gutierrez Robledo, L. M. |
author_sort | Gomez-Verjan, J. C. |
collection | PubMed |
description | Frailty is an age-associated condition, characterized by an inappropriate response to stress that results in a higher frequency of adverse outcomes (e.g., mortality, institutionalization and disability). Some light has been shed over its genetic background, but this is still a matter of debate. In the present study, we used network biology to analyze the interactome of frailty-related genes at different levels to relate them with pathways, clinical deficits and drugs with potential therapeutic implications. Significant pathways involved in frailty: apoptosis, proteolysis, muscle proliferation, and inflammation; genes as FN1, APP, CREBBP, EGFR playing a role as hubs and bottlenecks in the interactome network and epigenetic factors as HIST1H3 cluster and miR200 family were also involved. When connecting clinical deficits and genes, we identified five clusters that give insights into the biology of frailty: cancer, glucocorticoid receptor, TNF-α, myostatin, angiotensin converter enzyme, ApoE, interleukine-12 and −18. Finally, when performing network pharmacology analysis of the target nodes, some compounds were identified as potentially therapeutic (e.g., epigallocatechin gallate and antirheumatic agents); while some other substances appeared to be toxicants that may be involved in the development of this condition. |
format | Online Article Text |
id | pubmed-6646318 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-66463182019-07-29 Systems biology and network pharmacology of frailty reveal novel epigenetic targets and mechanisms Gomez-Verjan, J. C. Ramírez-Aldana, R. Pérez-Zepeda, M. U. Quiroz-Baez, R. Luna-López, A. Gutierrez Robledo, L. M. Sci Rep Article Frailty is an age-associated condition, characterized by an inappropriate response to stress that results in a higher frequency of adverse outcomes (e.g., mortality, institutionalization and disability). Some light has been shed over its genetic background, but this is still a matter of debate. In the present study, we used network biology to analyze the interactome of frailty-related genes at different levels to relate them with pathways, clinical deficits and drugs with potential therapeutic implications. Significant pathways involved in frailty: apoptosis, proteolysis, muscle proliferation, and inflammation; genes as FN1, APP, CREBBP, EGFR playing a role as hubs and bottlenecks in the interactome network and epigenetic factors as HIST1H3 cluster and miR200 family were also involved. When connecting clinical deficits and genes, we identified five clusters that give insights into the biology of frailty: cancer, glucocorticoid receptor, TNF-α, myostatin, angiotensin converter enzyme, ApoE, interleukine-12 and −18. Finally, when performing network pharmacology analysis of the target nodes, some compounds were identified as potentially therapeutic (e.g., epigallocatechin gallate and antirheumatic agents); while some other substances appeared to be toxicants that may be involved in the development of this condition. Nature Publishing Group UK 2019-07-22 /pmc/articles/PMC6646318/ /pubmed/31332237 http://dx.doi.org/10.1038/s41598-019-47087-7 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Gomez-Verjan, J. C. Ramírez-Aldana, R. Pérez-Zepeda, M. U. Quiroz-Baez, R. Luna-López, A. Gutierrez Robledo, L. M. Systems biology and network pharmacology of frailty reveal novel epigenetic targets and mechanisms |
title | Systems biology and network pharmacology of frailty reveal novel epigenetic targets and mechanisms |
title_full | Systems biology and network pharmacology of frailty reveal novel epigenetic targets and mechanisms |
title_fullStr | Systems biology and network pharmacology of frailty reveal novel epigenetic targets and mechanisms |
title_full_unstemmed | Systems biology and network pharmacology of frailty reveal novel epigenetic targets and mechanisms |
title_short | Systems biology and network pharmacology of frailty reveal novel epigenetic targets and mechanisms |
title_sort | systems biology and network pharmacology of frailty reveal novel epigenetic targets and mechanisms |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6646318/ https://www.ncbi.nlm.nih.gov/pubmed/31332237 http://dx.doi.org/10.1038/s41598-019-47087-7 |
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