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(1)H NMR-MS-based heterocovariance as a drug discovery tool for fishing bioactive compounds out of a complex mixture of structural analogues

Chemometric methods and correlation of spectroscopic or spectrometric data with bioactivity results are known to improve dereplication in classical bio-guided isolation approaches. However, in drug discovery from natural sources the isolation of bioactive constituents from a crude extract containing...

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Autores principales: Grienke, Ulrike, Foster, Paul A., Zwirchmayr, Julia, Tahir, Ammar, Rollinger, Judith M., Mikros, Emmanuel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6668471/
https://www.ncbi.nlm.nih.gov/pubmed/31366964
http://dx.doi.org/10.1038/s41598-019-47434-8
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author Grienke, Ulrike
Foster, Paul A.
Zwirchmayr, Julia
Tahir, Ammar
Rollinger, Judith M.
Mikros, Emmanuel
author_facet Grienke, Ulrike
Foster, Paul A.
Zwirchmayr, Julia
Tahir, Ammar
Rollinger, Judith M.
Mikros, Emmanuel
author_sort Grienke, Ulrike
collection PubMed
description Chemometric methods and correlation of spectroscopic or spectrometric data with bioactivity results are known to improve dereplication in classical bio-guided isolation approaches. However, in drug discovery from natural sources the isolation of bioactive constituents from a crude extract containing close structural analogues remains a significant challenge. This study is a (1)H NMR-MS workflow named ELINA (Eliciting Nature’s Activities) which is based on statistical heterocovariance analysis (HetCA) of (1)H NMR spectra detecting chemical features that are positively (“hot”) or negatively (“cold”) correlated with bioactivity prior to any isolation. ELINA is exemplified in the discovery of steroid sulfatase (STS) inhibiting lanostane triterpenes (LTTs) from a complex extract of the polypore fungus Fomitopsis pinicola.
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spelling pubmed-66684712019-08-06 (1)H NMR-MS-based heterocovariance as a drug discovery tool for fishing bioactive compounds out of a complex mixture of structural analogues Grienke, Ulrike Foster, Paul A. Zwirchmayr, Julia Tahir, Ammar Rollinger, Judith M. Mikros, Emmanuel Sci Rep Article Chemometric methods and correlation of spectroscopic or spectrometric data with bioactivity results are known to improve dereplication in classical bio-guided isolation approaches. However, in drug discovery from natural sources the isolation of bioactive constituents from a crude extract containing close structural analogues remains a significant challenge. This study is a (1)H NMR-MS workflow named ELINA (Eliciting Nature’s Activities) which is based on statistical heterocovariance analysis (HetCA) of (1)H NMR spectra detecting chemical features that are positively (“hot”) or negatively (“cold”) correlated with bioactivity prior to any isolation. ELINA is exemplified in the discovery of steroid sulfatase (STS) inhibiting lanostane triterpenes (LTTs) from a complex extract of the polypore fungus Fomitopsis pinicola. Nature Publishing Group UK 2019-07-31 /pmc/articles/PMC6668471/ /pubmed/31366964 http://dx.doi.org/10.1038/s41598-019-47434-8 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Grienke, Ulrike
Foster, Paul A.
Zwirchmayr, Julia
Tahir, Ammar
Rollinger, Judith M.
Mikros, Emmanuel
(1)H NMR-MS-based heterocovariance as a drug discovery tool for fishing bioactive compounds out of a complex mixture of structural analogues
title (1)H NMR-MS-based heterocovariance as a drug discovery tool for fishing bioactive compounds out of a complex mixture of structural analogues
title_full (1)H NMR-MS-based heterocovariance as a drug discovery tool for fishing bioactive compounds out of a complex mixture of structural analogues
title_fullStr (1)H NMR-MS-based heterocovariance as a drug discovery tool for fishing bioactive compounds out of a complex mixture of structural analogues
title_full_unstemmed (1)H NMR-MS-based heterocovariance as a drug discovery tool for fishing bioactive compounds out of a complex mixture of structural analogues
title_short (1)H NMR-MS-based heterocovariance as a drug discovery tool for fishing bioactive compounds out of a complex mixture of structural analogues
title_sort (1)h nmr-ms-based heterocovariance as a drug discovery tool for fishing bioactive compounds out of a complex mixture of structural analogues
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6668471/
https://www.ncbi.nlm.nih.gov/pubmed/31366964
http://dx.doi.org/10.1038/s41598-019-47434-8
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