Cargando…
BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs
Predicting biosynthetic gene clusters (BGCs) is critically important for discovery of antibiotics and other natural products. While BGC prediction from complete genomes is a well-studied problem, predicting BGCs in fragmented genomic assemblies remains challenging. The existing BGC prediction tools...
Autores principales: | Meleshko, Dmitry, Mohimani, Hosein, Tracanna, Vittorio, Hajirasouliha, Iman, Medema, Marnix H., Korobeynikov, Anton, Pevzner, Pavel A. |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory Press
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6673720/ https://www.ncbi.nlm.nih.gov/pubmed/31160374 http://dx.doi.org/10.1101/gr.243477.118 |
Ejemplares similares
-
metaSPAdes: a new versatile metagenomic assembler
por: Nurk, Sergey, et al.
Publicado: (2017) -
cloudrnaSPAdes: Isoform assembly using bulk barcoded RNA sequencing data
por: Meleshko, Dmitry, et al.
Publicado: (2023) -
Ariadne: synthetic long read deconvolution using assembly graphs
por: Mak, Lauren, et al.
Publicado: (2023) -
cloudSPAdes: assembly of synthetic long reads using de Bruijn graphs
por: Tolstoganov, Ivan, et al.
Publicado: (2019) -
Efficient detection and assembly of non-reference DNA sequences with synthetic long reads
por: Meleshko, Dmitry, et al.
Publicado: (2022)