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Haplotype analysis of SERPINE1 gene: Risk for aneurysmal subarachnoid hemorrhage and clinical outcomes
BACKGROUND: Aneurysmal subarachnoid hemorrhage (aSAH) has high fatality and permanent disability rates due to the severe damage to brain cells and inflammation. The SERPINE1 gene that encodes PAI‐1 for the regulation of tissue plasminogen activator is considered an important therapeutic target for a...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6687628/ https://www.ncbi.nlm.nih.gov/pubmed/31268630 http://dx.doi.org/10.1002/mgg3.737 |
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author | Lin, Mingkuan Griessenauer, Christoph J. Starke, Robert M. Tubbs, R. Shane Shoja, Mohammadali M. Foreman, Paul M. Vyas, Nilesh A. Walters, Beverly C. Harrigan, Mark R. Hendrix, Philipp Fisher, Winfield S. Pittet, Jean‐Francois Mathru, Mali Lipsky, Robert H. |
author_facet | Lin, Mingkuan Griessenauer, Christoph J. Starke, Robert M. Tubbs, R. Shane Shoja, Mohammadali M. Foreman, Paul M. Vyas, Nilesh A. Walters, Beverly C. Harrigan, Mark R. Hendrix, Philipp Fisher, Winfield S. Pittet, Jean‐Francois Mathru, Mali Lipsky, Robert H. |
author_sort | Lin, Mingkuan |
collection | PubMed |
description | BACKGROUND: Aneurysmal subarachnoid hemorrhage (aSAH) has high fatality and permanent disability rates due to the severe damage to brain cells and inflammation. The SERPINE1 gene that encodes PAI‐1 for the regulation of tissue plasminogen activator is considered an important therapeutic target for aSAH. METHODS: Six SNPs in the SERPINE1 gene (in order of rs2227631, rs1799889, rs6092, rs6090, rs2227684, rs7242) were investigated. Blood samples were genotyped with Taqman genotyping assays and pyrosequencing. The experiment‐wide statistically significant threshold for single marker analysis was set at p < 0.01 after evaluation of independent markers. Haplotype analysis was performed in Haplo.stats package with permutation tests. Bonferroni correction for multiple comparison in dominant, additive, and recessive model was applied. RESULTS: A total of 146 aSAH patients and 49 control subjects were involved in this study. The rs2227631 G allele is significant (p = 0.01) for aSAH compared to control. In aSAH group, haplotype analysis showed that G5GGGT homozygotes in recessive model were associated with delayed cerebral ischemia (p < 0.01, Odds Ratio = 5.14, 95% CI = 1.45–18.18), clinical vasospasm (p = 0.01, Odds Ratio = 4.58, 95% CI = 1.30–16.13), and longer intensive care unit stay (p = 0.01). By contrast, the G5GGAG carriers were associated with less incidence of cerebral edema (p < 0.01) and higher Glasgow Coma Scale (p < 0.01). The A4GGGT carriers were associated with less incidence of severe hypertension (>140/90) (p < 0.01). CONCLUSION: The results suggested an important regulatory role of the SERPINE1 gene polymorphism in clinical outcomes of aSAH. |
format | Online Article Text |
id | pubmed-6687628 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-66876282019-08-14 Haplotype analysis of SERPINE1 gene: Risk for aneurysmal subarachnoid hemorrhage and clinical outcomes Lin, Mingkuan Griessenauer, Christoph J. Starke, Robert M. Tubbs, R. Shane Shoja, Mohammadali M. Foreman, Paul M. Vyas, Nilesh A. Walters, Beverly C. Harrigan, Mark R. Hendrix, Philipp Fisher, Winfield S. Pittet, Jean‐Francois Mathru, Mali Lipsky, Robert H. Mol Genet Genomic Med Original Articles BACKGROUND: Aneurysmal subarachnoid hemorrhage (aSAH) has high fatality and permanent disability rates due to the severe damage to brain cells and inflammation. The SERPINE1 gene that encodes PAI‐1 for the regulation of tissue plasminogen activator is considered an important therapeutic target for aSAH. METHODS: Six SNPs in the SERPINE1 gene (in order of rs2227631, rs1799889, rs6092, rs6090, rs2227684, rs7242) were investigated. Blood samples were genotyped with Taqman genotyping assays and pyrosequencing. The experiment‐wide statistically significant threshold for single marker analysis was set at p < 0.01 after evaluation of independent markers. Haplotype analysis was performed in Haplo.stats package with permutation tests. Bonferroni correction for multiple comparison in dominant, additive, and recessive model was applied. RESULTS: A total of 146 aSAH patients and 49 control subjects were involved in this study. The rs2227631 G allele is significant (p = 0.01) for aSAH compared to control. In aSAH group, haplotype analysis showed that G5GGGT homozygotes in recessive model were associated with delayed cerebral ischemia (p < 0.01, Odds Ratio = 5.14, 95% CI = 1.45–18.18), clinical vasospasm (p = 0.01, Odds Ratio = 4.58, 95% CI = 1.30–16.13), and longer intensive care unit stay (p = 0.01). By contrast, the G5GGAG carriers were associated with less incidence of cerebral edema (p < 0.01) and higher Glasgow Coma Scale (p < 0.01). The A4GGGT carriers were associated with less incidence of severe hypertension (>140/90) (p < 0.01). CONCLUSION: The results suggested an important regulatory role of the SERPINE1 gene polymorphism in clinical outcomes of aSAH. John Wiley and Sons Inc. 2019-07-03 /pmc/articles/PMC6687628/ /pubmed/31268630 http://dx.doi.org/10.1002/mgg3.737 Text en © 2019 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Lin, Mingkuan Griessenauer, Christoph J. Starke, Robert M. Tubbs, R. Shane Shoja, Mohammadali M. Foreman, Paul M. Vyas, Nilesh A. Walters, Beverly C. Harrigan, Mark R. Hendrix, Philipp Fisher, Winfield S. Pittet, Jean‐Francois Mathru, Mali Lipsky, Robert H. Haplotype analysis of SERPINE1 gene: Risk for aneurysmal subarachnoid hemorrhage and clinical outcomes |
title | Haplotype analysis of SERPINE1 gene: Risk for aneurysmal subarachnoid hemorrhage and clinical outcomes |
title_full | Haplotype analysis of SERPINE1 gene: Risk for aneurysmal subarachnoid hemorrhage and clinical outcomes |
title_fullStr | Haplotype analysis of SERPINE1 gene: Risk for aneurysmal subarachnoid hemorrhage and clinical outcomes |
title_full_unstemmed | Haplotype analysis of SERPINE1 gene: Risk for aneurysmal subarachnoid hemorrhage and clinical outcomes |
title_short | Haplotype analysis of SERPINE1 gene: Risk for aneurysmal subarachnoid hemorrhage and clinical outcomes |
title_sort | haplotype analysis of serpine1 gene: risk for aneurysmal subarachnoid hemorrhage and clinical outcomes |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6687628/ https://www.ncbi.nlm.nih.gov/pubmed/31268630 http://dx.doi.org/10.1002/mgg3.737 |
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