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β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library
Bacterial artificial chromosome (BAC) library plays a critical role in the strategic research in genomics. Sperm is known as a good source for BAC library construction. However, preparation of intact DNA from the highly condensed sperm nuclei is not easy. Here we developed and validated an efficient...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
jbm
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6708924/ https://www.ncbi.nlm.nih.gov/pubmed/31453223 http://dx.doi.org/10.14440/jbm.2017.167 |
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author | Fujikura, Kohei Abe, Masanori Kuroda, Reiko |
author_facet | Fujikura, Kohei Abe, Masanori Kuroda, Reiko |
author_sort | Fujikura, Kohei |
collection | PubMed |
description | Bacterial artificial chromosome (BAC) library plays a critical role in the strategic research in genomics. Sperm is known as a good source for BAC library construction. However, preparation of intact DNA from the highly condensed sperm nuclei is not easy. Here we developed and validated an efficient DNA extraction strategy for BAC library construction from sperm embedded in agarose plugs. The protocol used a combination of lauroylsarcosine, proteinase K and β-mercaptoethanol (a reducing agent of nucleus) In comparison with the normal protocol without reducing agents, β-mercaptoethanol released high-molecular-weight DNA from the protamines which permit DNA to be packed very densely within the spermatozoan nucleus, without damaging DNA. Extracted DNA by this method was readily digested by restriction enzymes and ideal for BAC library construction. |
format | Online Article Text |
id | pubmed-6708924 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | jbm |
record_format | MEDLINE/PubMed |
spelling | pubmed-67089242019-08-26 β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library Fujikura, Kohei Abe, Masanori Kuroda, Reiko J Biol Methods Benchmark Bacterial artificial chromosome (BAC) library plays a critical role in the strategic research in genomics. Sperm is known as a good source for BAC library construction. However, preparation of intact DNA from the highly condensed sperm nuclei is not easy. Here we developed and validated an efficient DNA extraction strategy for BAC library construction from sperm embedded in agarose plugs. The protocol used a combination of lauroylsarcosine, proteinase K and β-mercaptoethanol (a reducing agent of nucleus) In comparison with the normal protocol without reducing agents, β-mercaptoethanol released high-molecular-weight DNA from the protamines which permit DNA to be packed very densely within the spermatozoan nucleus, without damaging DNA. Extracted DNA by this method was readily digested by restriction enzymes and ideal for BAC library construction. jbm 2017-01-20 /pmc/articles/PMC6708924/ /pubmed/31453223 http://dx.doi.org/10.14440/jbm.2017.167 Text en This work is licensed under a Creative Commons Attribution 3.0 License (http://creativecommons.org/licenses/by/3.0) . |
spellingShingle | Benchmark Fujikura, Kohei Abe, Masanori Kuroda, Reiko β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library |
title | β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library |
title_full | β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library |
title_fullStr | β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library |
title_full_unstemmed | β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library |
title_short | β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library |
title_sort | β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library |
topic | Benchmark |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6708924/ https://www.ncbi.nlm.nih.gov/pubmed/31453223 http://dx.doi.org/10.14440/jbm.2017.167 |
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