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β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library

Bacterial artificial chromosome (BAC) library plays a critical role in the strategic research in genomics. Sperm is known as a good source for BAC library construction. However, preparation of intact DNA from the highly condensed sperm nuclei is not easy. Here we developed and validated an efficient...

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Detalles Bibliográficos
Autores principales: Fujikura, Kohei, Abe, Masanori, Kuroda, Reiko
Formato: Online Artículo Texto
Lenguaje:English
Publicado: jbm 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6708924/
https://www.ncbi.nlm.nih.gov/pubmed/31453223
http://dx.doi.org/10.14440/jbm.2017.167
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author Fujikura, Kohei
Abe, Masanori
Kuroda, Reiko
author_facet Fujikura, Kohei
Abe, Masanori
Kuroda, Reiko
author_sort Fujikura, Kohei
collection PubMed
description Bacterial artificial chromosome (BAC) library plays a critical role in the strategic research in genomics. Sperm is known as a good source for BAC library construction. However, preparation of intact DNA from the highly condensed sperm nuclei is not easy. Here we developed and validated an efficient DNA extraction strategy for BAC library construction from sperm embedded in agarose plugs. The protocol used a combination of lauroylsarcosine, proteinase K and β-mercaptoethanol (a reducing agent of nucleus) In comparison with the normal protocol without reducing agents, β-mercaptoethanol released high-molecular-weight DNA from the protamines which permit DNA to be packed very densely within the spermatozoan nucleus, without damaging DNA. Extracted DNA by this method was readily digested by restriction enzymes and ideal for BAC library construction.
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spelling pubmed-67089242019-08-26 β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library Fujikura, Kohei Abe, Masanori Kuroda, Reiko J Biol Methods Benchmark Bacterial artificial chromosome (BAC) library plays a critical role in the strategic research in genomics. Sperm is known as a good source for BAC library construction. However, preparation of intact DNA from the highly condensed sperm nuclei is not easy. Here we developed and validated an efficient DNA extraction strategy for BAC library construction from sperm embedded in agarose plugs. The protocol used a combination of lauroylsarcosine, proteinase K and β-mercaptoethanol (a reducing agent of nucleus) In comparison with the normal protocol without reducing agents, β-mercaptoethanol released high-molecular-weight DNA from the protamines which permit DNA to be packed very densely within the spermatozoan nucleus, without damaging DNA. Extracted DNA by this method was readily digested by restriction enzymes and ideal for BAC library construction. jbm 2017-01-20 /pmc/articles/PMC6708924/ /pubmed/31453223 http://dx.doi.org/10.14440/jbm.2017.167 Text en This work is licensed under a Creative Commons Attribution 3.0 License (http://creativecommons.org/licenses/by/3.0) .
spellingShingle Benchmark
Fujikura, Kohei
Abe, Masanori
Kuroda, Reiko
β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library
title β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library
title_full β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library
title_fullStr β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library
title_full_unstemmed β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library
title_short β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library
title_sort β-mercaptoethanol assists efficient construction of sperm bacterial artificial chromosome library
topic Benchmark
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6708924/
https://www.ncbi.nlm.nih.gov/pubmed/31453223
http://dx.doi.org/10.14440/jbm.2017.167
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