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DNA G-Quadruplexes Activate Heme for Robust Catalysis of Carbene Transfer Reactions

[Image: see text] Guanine-rich single-stranded DNAs and RNAs that fold into G-quadruplexes (GQs) are known to complex tightly with Fe(II)-heme and Fe(III)-heme (hemin), ubiquitous cellular cofactors. Heme–GQ (DNA) complexes, known as heme·DNAzymes, are able to utilize hydrogen peroxide as an oxidant...

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Autores principales: Ibrahim, Hanadi, Mulyk, Paul, Sen, Dipankar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2019
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6751727/
https://www.ncbi.nlm.nih.gov/pubmed/31552375
http://dx.doi.org/10.1021/acsomega.9b02305
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author Ibrahim, Hanadi
Mulyk, Paul
Sen, Dipankar
author_facet Ibrahim, Hanadi
Mulyk, Paul
Sen, Dipankar
author_sort Ibrahim, Hanadi
collection PubMed
description [Image: see text] Guanine-rich single-stranded DNAs and RNAs that fold into G-quadruplexes (GQs) are known to complex tightly with Fe(II)-heme and Fe(III)-heme (hemin), ubiquitous cellular cofactors. Heme–GQ (DNA) complexes, known as heme·DNAzymes, are able to utilize hydrogen peroxide as an oxidant to vigorously catalyze a variety of one-electron (peroxidase) and two-electron (peroxygenase) oxidation reactions. Herein, we show that complexes of Fe(II)-heme with GQs also robustly catalyze a mechanistically distinct reaction, carbene transfer to an alkene substrate. Significant enhancements were seen in both reaction kinetics and product turnover (∼180) relative to disaggregated Fe(II)-heme in the absence of DNA or in the presence of other DNA folds, such as single-stranded or double-stranded DNA. Heme binds to GQs by end-stacking. Simple, intramolecularly folded GQs are unable to provide a complexly structured “distal side” environment to the bound heme; therefore, such DNAzymes do not display significant product stereoselectivity. However, intermolecular GQs with multiple pendant nucleotides show increasing stereoselectivity in addition to their enhanced catalytic rates. These results recapitulate the unique functional synergy and highlight the surprising catalytic versatility of complexes formed between heme and DNA/RNA GQs. Our findings suggest that heme·DNAzymes and heme·ribozymes may prove to be useful reagents for carbon–carbon bond forming “green” reactions carried out in vitro and likely within living cells.
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spelling pubmed-67517272019-09-24 DNA G-Quadruplexes Activate Heme for Robust Catalysis of Carbene Transfer Reactions Ibrahim, Hanadi Mulyk, Paul Sen, Dipankar ACS Omega [Image: see text] Guanine-rich single-stranded DNAs and RNAs that fold into G-quadruplexes (GQs) are known to complex tightly with Fe(II)-heme and Fe(III)-heme (hemin), ubiquitous cellular cofactors. Heme–GQ (DNA) complexes, known as heme·DNAzymes, are able to utilize hydrogen peroxide as an oxidant to vigorously catalyze a variety of one-electron (peroxidase) and two-electron (peroxygenase) oxidation reactions. Herein, we show that complexes of Fe(II)-heme with GQs also robustly catalyze a mechanistically distinct reaction, carbene transfer to an alkene substrate. Significant enhancements were seen in both reaction kinetics and product turnover (∼180) relative to disaggregated Fe(II)-heme in the absence of DNA or in the presence of other DNA folds, such as single-stranded or double-stranded DNA. Heme binds to GQs by end-stacking. Simple, intramolecularly folded GQs are unable to provide a complexly structured “distal side” environment to the bound heme; therefore, such DNAzymes do not display significant product stereoselectivity. However, intermolecular GQs with multiple pendant nucleotides show increasing stereoselectivity in addition to their enhanced catalytic rates. These results recapitulate the unique functional synergy and highlight the surprising catalytic versatility of complexes formed between heme and DNA/RNA GQs. Our findings suggest that heme·DNAzymes and heme·ribozymes may prove to be useful reagents for carbon–carbon bond forming “green” reactions carried out in vitro and likely within living cells. American Chemical Society 2019-08-31 /pmc/articles/PMC6751727/ /pubmed/31552375 http://dx.doi.org/10.1021/acsomega.9b02305 Text en Copyright © 2019 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Ibrahim, Hanadi
Mulyk, Paul
Sen, Dipankar
DNA G-Quadruplexes Activate Heme for Robust Catalysis of Carbene Transfer Reactions
title DNA G-Quadruplexes Activate Heme for Robust Catalysis of Carbene Transfer Reactions
title_full DNA G-Quadruplexes Activate Heme for Robust Catalysis of Carbene Transfer Reactions
title_fullStr DNA G-Quadruplexes Activate Heme for Robust Catalysis of Carbene Transfer Reactions
title_full_unstemmed DNA G-Quadruplexes Activate Heme for Robust Catalysis of Carbene Transfer Reactions
title_short DNA G-Quadruplexes Activate Heme for Robust Catalysis of Carbene Transfer Reactions
title_sort dna g-quadruplexes activate heme for robust catalysis of carbene transfer reactions
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6751727/
https://www.ncbi.nlm.nih.gov/pubmed/31552375
http://dx.doi.org/10.1021/acsomega.9b02305
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