Cargando…

Aza-proline effectively mimics l-proline stereochemistry in triple helical collagen

The prevalence of l-amino acids in biomolecules has been shown to have teleological importance in biomolecular structure and self-assembly. Recently, biophysical studies have demonstrated that natural l-amino acids can be replaced with non-natural achiral aza-amino acids in folded protein structures...

Descripción completa

Detalles Bibliográficos
Autores principales: Kasznel, Alexander J., Harris, Trevor, Porter, Nicholas J., Zhang, Yitao, Chenoweth, David M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Royal Society of Chemistry 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6761869/
https://www.ncbi.nlm.nih.gov/pubmed/31588264
http://dx.doi.org/10.1039/c9sc02211b
_version_ 1783454115120021504
author Kasznel, Alexander J.
Harris, Trevor
Porter, Nicholas J.
Zhang, Yitao
Chenoweth, David M.
author_facet Kasznel, Alexander J.
Harris, Trevor
Porter, Nicholas J.
Zhang, Yitao
Chenoweth, David M.
author_sort Kasznel, Alexander J.
collection PubMed
description The prevalence of l-amino acids in biomolecules has been shown to have teleological importance in biomolecular structure and self-assembly. Recently, biophysical studies have demonstrated that natural l-amino acids can be replaced with non-natural achiral aza-amino acids in folded protein structures such as triple helical collagen. However, the structural consequences of achiral aza-amino acid incorporation has not been elucidated in the context of any relevant folded biomolecule. Herein, we use X-ray crystallography to provide the first atomic resolution crystal structure of an achiral aza-amino acid residue embedded within a folded protein structure, definitively illustrating that achiral aza-proline has the capacity to effectively mimic the stereochemistry of natural amino acids within the context of triple helical collagen. We further corroborate this finding with density functional theory computational analysis showing that the natural l-amino acid stereochemistry for aza-proline is energetically favored when arranged in the aza-proline-hydroxyproline-glycine motif. In addition to providing fundamental insight into peptide and protein structure, the incorporation of achiral stereochemical mimics such as aza-amino acids could have far reaching impacts in areas ranging from synthetic materials to drug design.
format Online
Article
Text
id pubmed-6761869
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Royal Society of Chemistry
record_format MEDLINE/PubMed
spelling pubmed-67618692019-10-04 Aza-proline effectively mimics l-proline stereochemistry in triple helical collagen Kasznel, Alexander J. Harris, Trevor Porter, Nicholas J. Zhang, Yitao Chenoweth, David M. Chem Sci Chemistry The prevalence of l-amino acids in biomolecules has been shown to have teleological importance in biomolecular structure and self-assembly. Recently, biophysical studies have demonstrated that natural l-amino acids can be replaced with non-natural achiral aza-amino acids in folded protein structures such as triple helical collagen. However, the structural consequences of achiral aza-amino acid incorporation has not been elucidated in the context of any relevant folded biomolecule. Herein, we use X-ray crystallography to provide the first atomic resolution crystal structure of an achiral aza-amino acid residue embedded within a folded protein structure, definitively illustrating that achiral aza-proline has the capacity to effectively mimic the stereochemistry of natural amino acids within the context of triple helical collagen. We further corroborate this finding with density functional theory computational analysis showing that the natural l-amino acid stereochemistry for aza-proline is energetically favored when arranged in the aza-proline-hydroxyproline-glycine motif. In addition to providing fundamental insight into peptide and protein structure, the incorporation of achiral stereochemical mimics such as aza-amino acids could have far reaching impacts in areas ranging from synthetic materials to drug design. Royal Society of Chemistry 2019-06-21 /pmc/articles/PMC6761869/ /pubmed/31588264 http://dx.doi.org/10.1039/c9sc02211b Text en This journal is © The Royal Society of Chemistry 2019 http://creativecommons.org/licenses/by/3.0/ This article is freely available. This article is licensed under a Creative Commons Attribution 3.0 Unported Licence (CC BY 3.0)
spellingShingle Chemistry
Kasznel, Alexander J.
Harris, Trevor
Porter, Nicholas J.
Zhang, Yitao
Chenoweth, David M.
Aza-proline effectively mimics l-proline stereochemistry in triple helical collagen
title Aza-proline effectively mimics l-proline stereochemistry in triple helical collagen
title_full Aza-proline effectively mimics l-proline stereochemistry in triple helical collagen
title_fullStr Aza-proline effectively mimics l-proline stereochemistry in triple helical collagen
title_full_unstemmed Aza-proline effectively mimics l-proline stereochemistry in triple helical collagen
title_short Aza-proline effectively mimics l-proline stereochemistry in triple helical collagen
title_sort aza-proline effectively mimics l-proline stereochemistry in triple helical collagen
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6761869/
https://www.ncbi.nlm.nih.gov/pubmed/31588264
http://dx.doi.org/10.1039/c9sc02211b
work_keys_str_mv AT kasznelalexanderj azaprolineeffectivelymimicslprolinestereochemistryintriplehelicalcollagen
AT harristrevor azaprolineeffectivelymimicslprolinestereochemistryintriplehelicalcollagen
AT porternicholasj azaprolineeffectivelymimicslprolinestereochemistryintriplehelicalcollagen
AT zhangyitao azaprolineeffectivelymimicslprolinestereochemistryintriplehelicalcollagen
AT chenowethdavidm azaprolineeffectivelymimicslprolinestereochemistryintriplehelicalcollagen