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Bit-parallel sequence-to-graph alignment

MOTIVATION: Graphs are commonly used to represent sets of sequences. Either edges or nodes can be labeled by sequences, so that each path in the graph spells a concatenated sequence. Examples include graphs to represent genome assemblies, such as string graphs and de Bruijn graphs, and graphs to rep...

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Detalles Bibliográficos
Autores principales: Rautiainen, Mikko, Mäkinen, Veli, Marschall, Tobias
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6761980/
https://www.ncbi.nlm.nih.gov/pubmed/30851095
http://dx.doi.org/10.1093/bioinformatics/btz162