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An ensemble of cryo-EM structures of TRiC reveal its conformational landscape and subunit specificity

TRiC/CCT assists the folding of ∼10% of cytosolic proteins through an ATP-driven conformational cycle and is essential in maintaining protein homeostasis. Here, we determined an ensemble of cryo-electron microscopy (cryo-EM) structures of yeast TRiC at various nucleotide concentrations, with 4 open-...

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Autores principales: Jin, Mingliang, Han, Wenyu, Liu, Caixuan, Zang, Yunxiang, Li, Jiawei, Wang, Fangfang, Wang, Yanxing, Cong, Yao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6765261/
https://www.ncbi.nlm.nih.gov/pubmed/31492816
http://dx.doi.org/10.1073/pnas.1903976116
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author Jin, Mingliang
Han, Wenyu
Liu, Caixuan
Zang, Yunxiang
Li, Jiawei
Wang, Fangfang
Wang, Yanxing
Cong, Yao
author_facet Jin, Mingliang
Han, Wenyu
Liu, Caixuan
Zang, Yunxiang
Li, Jiawei
Wang, Fangfang
Wang, Yanxing
Cong, Yao
author_sort Jin, Mingliang
collection PubMed
description TRiC/CCT assists the folding of ∼10% of cytosolic proteins through an ATP-driven conformational cycle and is essential in maintaining protein homeostasis. Here, we determined an ensemble of cryo-electron microscopy (cryo-EM) structures of yeast TRiC at various nucleotide concentrations, with 4 open-state maps resolved at near-atomic resolutions, and a closed-state map at atomic resolution, revealing an extra layer of an unforeseen N-terminal allosteric network. We found that, during TRiC ring closure, the CCT7 subunit moves first, responding to nucleotide binding; CCT4 is the last to bind ATP, serving as an ATP sensor; and CCT8 remains ADP-bound and is hardly involved in the ATPase-cycle in our experimental conditions; overall, yeast TRiC consumes nucleotide in a 2-ring positively coordinated manner. Our results depict a thorough picture of the TRiC conformational landscape and its allosteric transitions from the open to closed states in more structural detail and offer insights into TRiC subunit specificity in ATP consumption and ring closure, and potentially in substrate processing.
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spelling pubmed-67652612019-10-02 An ensemble of cryo-EM structures of TRiC reveal its conformational landscape and subunit specificity Jin, Mingliang Han, Wenyu Liu, Caixuan Zang, Yunxiang Li, Jiawei Wang, Fangfang Wang, Yanxing Cong, Yao Proc Natl Acad Sci U S A PNAS Plus TRiC/CCT assists the folding of ∼10% of cytosolic proteins through an ATP-driven conformational cycle and is essential in maintaining protein homeostasis. Here, we determined an ensemble of cryo-electron microscopy (cryo-EM) structures of yeast TRiC at various nucleotide concentrations, with 4 open-state maps resolved at near-atomic resolutions, and a closed-state map at atomic resolution, revealing an extra layer of an unforeseen N-terminal allosteric network. We found that, during TRiC ring closure, the CCT7 subunit moves first, responding to nucleotide binding; CCT4 is the last to bind ATP, serving as an ATP sensor; and CCT8 remains ADP-bound and is hardly involved in the ATPase-cycle in our experimental conditions; overall, yeast TRiC consumes nucleotide in a 2-ring positively coordinated manner. Our results depict a thorough picture of the TRiC conformational landscape and its allosteric transitions from the open to closed states in more structural detail and offer insights into TRiC subunit specificity in ATP consumption and ring closure, and potentially in substrate processing. National Academy of Sciences 2019-09-24 2019-09-06 /pmc/articles/PMC6765261/ /pubmed/31492816 http://dx.doi.org/10.1073/pnas.1903976116 Text en Copyright © 2019 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/ https://creativecommons.org/licenses/by-nc-nd/4.0/This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle PNAS Plus
Jin, Mingliang
Han, Wenyu
Liu, Caixuan
Zang, Yunxiang
Li, Jiawei
Wang, Fangfang
Wang, Yanxing
Cong, Yao
An ensemble of cryo-EM structures of TRiC reveal its conformational landscape and subunit specificity
title An ensemble of cryo-EM structures of TRiC reveal its conformational landscape and subunit specificity
title_full An ensemble of cryo-EM structures of TRiC reveal its conformational landscape and subunit specificity
title_fullStr An ensemble of cryo-EM structures of TRiC reveal its conformational landscape and subunit specificity
title_full_unstemmed An ensemble of cryo-EM structures of TRiC reveal its conformational landscape and subunit specificity
title_short An ensemble of cryo-EM structures of TRiC reveal its conformational landscape and subunit specificity
title_sort ensemble of cryo-em structures of tric reveal its conformational landscape and subunit specificity
topic PNAS Plus
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6765261/
https://www.ncbi.nlm.nih.gov/pubmed/31492816
http://dx.doi.org/10.1073/pnas.1903976116
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