Cargando…
Synthetic Activators of Cell Migration Designed by Constructive Machine Learning
Constructive machine learning aims to create examples from its learned domain which are likely to exhibit similar properties. Here, a recurrent neural network was trained with the chemical structures of known cell‐migration modulators. This machine learning model was used to generate new molecules t...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6807213/ https://www.ncbi.nlm.nih.gov/pubmed/31660283 http://dx.doi.org/10.1002/open.201900222 |
_version_ | 1783461691914190848 |
---|---|
author | Bruns, Dominique Merk, Daniel Santhana Kumar, Karthiga Baumgartner, Martin Schneider, Gisbert |
author_facet | Bruns, Dominique Merk, Daniel Santhana Kumar, Karthiga Baumgartner, Martin Schneider, Gisbert |
author_sort | Bruns, Dominique |
collection | PubMed |
description | Constructive machine learning aims to create examples from its learned domain which are likely to exhibit similar properties. Here, a recurrent neural network was trained with the chemical structures of known cell‐migration modulators. This machine learning model was used to generate new molecules that mimic the training compounds. Two top‐scoring designs were synthesized, and tested for functional activity in a phenotypic spheroid cell migration assay. These computationally generated small molecules significantly increased the migration of medulloblastoma cells. The results further corroborate the applicability of constructive machine learning to the de novo design of druglike molecules with desired properties. |
format | Online Article Text |
id | pubmed-6807213 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-68072132019-10-28 Synthetic Activators of Cell Migration Designed by Constructive Machine Learning Bruns, Dominique Merk, Daniel Santhana Kumar, Karthiga Baumgartner, Martin Schneider, Gisbert ChemistryOpen Full Papers Constructive machine learning aims to create examples from its learned domain which are likely to exhibit similar properties. Here, a recurrent neural network was trained with the chemical structures of known cell‐migration modulators. This machine learning model was used to generate new molecules that mimic the training compounds. Two top‐scoring designs were synthesized, and tested for functional activity in a phenotypic spheroid cell migration assay. These computationally generated small molecules significantly increased the migration of medulloblastoma cells. The results further corroborate the applicability of constructive machine learning to the de novo design of druglike molecules with desired properties. John Wiley and Sons Inc. 2019-10-23 /pmc/articles/PMC6807213/ /pubmed/31660283 http://dx.doi.org/10.1002/open.201900222 Text en © 2019 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Full Papers Bruns, Dominique Merk, Daniel Santhana Kumar, Karthiga Baumgartner, Martin Schneider, Gisbert Synthetic Activators of Cell Migration Designed by Constructive Machine Learning |
title | Synthetic Activators of Cell Migration Designed by Constructive Machine Learning |
title_full | Synthetic Activators of Cell Migration Designed by Constructive Machine Learning |
title_fullStr | Synthetic Activators of Cell Migration Designed by Constructive Machine Learning |
title_full_unstemmed | Synthetic Activators of Cell Migration Designed by Constructive Machine Learning |
title_short | Synthetic Activators of Cell Migration Designed by Constructive Machine Learning |
title_sort | synthetic activators of cell migration designed by constructive machine learning |
topic | Full Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6807213/ https://www.ncbi.nlm.nih.gov/pubmed/31660283 http://dx.doi.org/10.1002/open.201900222 |
work_keys_str_mv | AT brunsdominique syntheticactivatorsofcellmigrationdesignedbyconstructivemachinelearning AT merkdaniel syntheticactivatorsofcellmigrationdesignedbyconstructivemachinelearning AT santhanakumarkarthiga syntheticactivatorsofcellmigrationdesignedbyconstructivemachinelearning AT baumgartnermartin syntheticactivatorsofcellmigrationdesignedbyconstructivemachinelearning AT schneidergisbert syntheticactivatorsofcellmigrationdesignedbyconstructivemachinelearning |