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To Trim or Not to Trim: Effects of Read Trimming on the De Novo Genome Assembly of a Widespread East Asian Passerine, the Rufous-Capped Babbler (Cyanoderma ruficeps Blyth)

Trimming low quality bases from sequencing reads is considered as routine procedure for genome assembly; however, we know little about its pros and cons. Here, we used empirical data to examine how read trimming affects assembled genome quality and computational time for a widespread East Asian pass...

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Detalles Bibliográficos
Autores principales: Yang, Shang-Fang, Lu, Chia-Wei, Yao, Cheng-Te, Hung, Chih-Ming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6826712/
https://www.ncbi.nlm.nih.gov/pubmed/31548511
http://dx.doi.org/10.3390/genes10100737