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Athena: Automated Tuning of k-mer based Genomic Error Correction Algorithms using Language Models

The performance of most error-correction (EC) algorithms that operate on genomics reads is dependent on the proper choice of its configuration parameters, such as the value of k in k-mer based techniques. In this work, we target the problem of finding the best values of these configuration parameter...

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Detalles Bibliográficos
Autores principales: Abdallah, Mustafa, Mahgoub, Ashraf, Ahmed, Hany, Chaterji, Somali
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6834855/
https://www.ncbi.nlm.nih.gov/pubmed/31695060
http://dx.doi.org/10.1038/s41598-019-52196-4