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Deciphering protein evolution and fitness landscapes with latent space models

Protein sequences contain rich information about protein evolution, fitness landscapes, and stability. Here we investigate how latent space models trained using variational auto-encoders can infer these properties from sequences. Using both simulated and real sequences, we show that the low dimensio...

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Detalles Bibliográficos
Autores principales: Ding, Xinqiang, Zou, Zhengting, Brooks III, Charles L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6904478/
https://www.ncbi.nlm.nih.gov/pubmed/31822668
http://dx.doi.org/10.1038/s41467-019-13633-0