Cargando…
Sensitive detection of circular DNAs at single-nucleotide resolution using guided realignment of partially aligned reads
BACKGROUND: Circular DNA has recently been identified across different species including human normal and cancerous tissue, but short-read mappers are unable to align many of the reads crossing circle junctions hence limiting their detection from short-read sequencing data. RESULTS: Here, we propose...
Autores principales: | Prada-Luengo, Iñigo, Krogh, Anders, Maretty, Lasse, Regenberg, Birgitte |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6909605/ https://www.ncbi.nlm.nih.gov/pubmed/31830908 http://dx.doi.org/10.1186/s12859-019-3160-3 |
Ejemplares similares
-
To Be or Not to Be: Circular RNAs or mRNAs From Circular DNAs?
por: Iparraguirre, Leire, et al.
Publicado: (2019) -
Replicative aging is associated with loss of genetic heterogeneity from extrachromosomal circular DNA in Saccharomyces cerevisiae
por: Prada-Luengo, Iñigo, et al.
Publicado: (2020) -
Circular DNA elements of chromosomal origin are common in healthy human somatic tissue
por: Møller, Henrik Devitt, et al.
Publicado: (2018) -
Bazam: a rapid method for read extraction and realignment of high-throughput sequencing data
por: Sadedin, Simon P., et al.
Publicado: (2019) -
Near-Random Distribution of Chromosome-Derived Circular DNA in the Condensed Genome of Pigeons and the Larger, More Repeat-Rich Human Genome
por: Møller, Henrik Devitt, et al.
Publicado: (2019)