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Exploring Relationships between the Density of Charged Tracts within Disordered Regions and Phase Separation

Biomolecular condensates form through a process termed phase separation and play diverse roles throughout the cell. Proteins that undergo phase separation often have disordered regions that can engage in weak, multivalent interactions; however, our understanding of the sequence grammar that defines...

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Detalles Bibliográficos
Autores principales: Somjee, Ramiz, Mitrea, Diana M., Kriwacki, Richard W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6939312/
https://www.ncbi.nlm.nih.gov/pubmed/31797598
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author Somjee, Ramiz
Mitrea, Diana M.
Kriwacki, Richard W.
author_facet Somjee, Ramiz
Mitrea, Diana M.
Kriwacki, Richard W.
author_sort Somjee, Ramiz
collection PubMed
description Biomolecular condensates form through a process termed phase separation and play diverse roles throughout the cell. Proteins that undergo phase separation often have disordered regions that can engage in weak, multivalent interactions; however, our understanding of the sequence grammar that defines which proteins phase separate is far from complete. Here, we show that proteins that display a high density of charged tracts within intrinsically disordered regions are likely to be constituents of electrostatically organized biomolecular condensates. We scored the human proteome using an algorithm termed ABTdensity that quantifies the density of charged tracts and observed that proteins with more charged tracts are enriched in particular Gene Ontology annotations and, based upon analysis of interaction networks, cluster into distinct biomolecular condensates. These results suggest that electrostatically-driven, multivalent interactions involving charged tracts within disordered regions serve to organize certain biomolecular condensates through phase separation.
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spelling pubmed-69393122020-01-02 Exploring Relationships between the Density of Charged Tracts within Disordered Regions and Phase Separation Somjee, Ramiz Mitrea, Diana M. Kriwacki, Richard W. Pac Symp Biocomput Article Biomolecular condensates form through a process termed phase separation and play diverse roles throughout the cell. Proteins that undergo phase separation often have disordered regions that can engage in weak, multivalent interactions; however, our understanding of the sequence grammar that defines which proteins phase separate is far from complete. Here, we show that proteins that display a high density of charged tracts within intrinsically disordered regions are likely to be constituents of electrostatically organized biomolecular condensates. We scored the human proteome using an algorithm termed ABTdensity that quantifies the density of charged tracts and observed that proteins with more charged tracts are enriched in particular Gene Ontology annotations and, based upon analysis of interaction networks, cluster into distinct biomolecular condensates. These results suggest that electrostatically-driven, multivalent interactions involving charged tracts within disordered regions serve to organize certain biomolecular condensates through phase separation. 2020 /pmc/articles/PMC6939312/ /pubmed/31797598 Text en http://creativecommons.org/licenses/by/4.0/ Open Access chapter published by World Scientific Publishing Company and distributed under the terms of the Creative Commons Attribution Non-Commercial (CC BY-NC) 4.0 License.
spellingShingle Article
Somjee, Ramiz
Mitrea, Diana M.
Kriwacki, Richard W.
Exploring Relationships between the Density of Charged Tracts within Disordered Regions and Phase Separation
title Exploring Relationships between the Density of Charged Tracts within Disordered Regions and Phase Separation
title_full Exploring Relationships between the Density of Charged Tracts within Disordered Regions and Phase Separation
title_fullStr Exploring Relationships between the Density of Charged Tracts within Disordered Regions and Phase Separation
title_full_unstemmed Exploring Relationships between the Density of Charged Tracts within Disordered Regions and Phase Separation
title_short Exploring Relationships between the Density of Charged Tracts within Disordered Regions and Phase Separation
title_sort exploring relationships between the density of charged tracts within disordered regions and phase separation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6939312/
https://www.ncbi.nlm.nih.gov/pubmed/31797598
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