High-quality draft genome and characterization of commercially potent probiotic Lactobacillus strains

Lactobacillus acidophilus UBLA-34, L. paracasei UBLPC-35, L. plantarum UBLP-40, and L. reuteri UBLRU-87 were isolated from different varieties of fermented foods. To determine the probiotic safety at the strain level, the whole genome of the respective strains was sequenced, assembled, and character...

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Autores principales: Sulthana, Ayesha, Lakshmi, Suvarna G., Madempudi, Ratna Sudha
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korea Genome Organization 2019
Materias:
Genomic Archive
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944049/
https://www.ncbi.nlm.nih.gov/pubmed/31896243
http://dx.doi.org/10.5808/GI.2019.17.4.e43
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author Sulthana, Ayesha
Lakshmi, Suvarna G.
Madempudi, Ratna Sudha
author_facet Sulthana, Ayesha
Lakshmi, Suvarna G.
Madempudi, Ratna Sudha
author_sort Sulthana, Ayesha
collection PubMed
description Lactobacillus acidophilus UBLA-34, L. paracasei UBLPC-35, L. plantarum UBLP-40, and L. reuteri UBLRU-87 were isolated from different varieties of fermented foods. To determine the probiotic safety at the strain level, the whole genome of the respective strains was sequenced, assembled, and characterized. Both the core-genome and pan-genome phylogeny showed that L. reuteri was closest to L. plantarum than to L. acidophilus, which was closest to L. paracasei. The genomic analysis of all the strains confirmed the absence of genes encoding putative virulence factors, antibiotic resistance, and the plasmids.
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spelling pubmed-69440492020-01-09 High-quality draft genome and characterization of commercially potent probiotic Lactobacillus strains Sulthana, Ayesha Lakshmi, Suvarna G. Madempudi, Ratna Sudha Genomics Inform Genomic Archive Lactobacillus acidophilus UBLA-34, L. paracasei UBLPC-35, L. plantarum UBLP-40, and L. reuteri UBLRU-87 were isolated from different varieties of fermented foods. To determine the probiotic safety at the strain level, the whole genome of the respective strains was sequenced, assembled, and characterized. Both the core-genome and pan-genome phylogeny showed that L. reuteri was closest to L. plantarum than to L. acidophilus, which was closest to L. paracasei. The genomic analysis of all the strains confirmed the absence of genes encoding putative virulence factors, antibiotic resistance, and the plasmids. Korea Genome Organization 2019-11-07 /pmc/articles/PMC6944049/ /pubmed/31896243 http://dx.doi.org/10.5808/GI.2019.17.4.e43 Text en (c) 2019, Korea Genome Organization (CC) This is an open-access article distributed under the terms of the Creative Commons Attribution license(https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Genomic Archive
Sulthana, Ayesha
Lakshmi, Suvarna G.
Madempudi, Ratna Sudha
High-quality draft genome and characterization of commercially potent probiotic Lactobacillus strains
title High-quality draft genome and characterization of commercially potent probiotic Lactobacillus strains
title_full High-quality draft genome and characterization of commercially potent probiotic Lactobacillus strains
title_fullStr High-quality draft genome and characterization of commercially potent probiotic Lactobacillus strains
title_full_unstemmed High-quality draft genome and characterization of commercially potent probiotic Lactobacillus strains
title_short High-quality draft genome and characterization of commercially potent probiotic Lactobacillus strains
title_sort high-quality draft genome and characterization of commercially potent probiotic lactobacillus strains
topic Genomic Archive
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944049/
https://www.ncbi.nlm.nih.gov/pubmed/31896243
http://dx.doi.org/10.5808/GI.2019.17.4.e43
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