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Improving patient classification and biomarker assessment using Gaussian Mixture Models and Bayes’ rule

In clinical research, determining cutoff values for continuous variables in test results remains challenging, particularly when considering candidate biomarkers or therapeutic targets for disease. Distribution of a continuous variable into two populations is known as dichotomization and has been com...

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Autor principal: Guvakova, Marina A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals LLC 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6959929/
https://www.ncbi.nlm.nih.gov/pubmed/31984216
http://dx.doi.org/10.18632/oncoscience.494
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author Guvakova, Marina A.
author_facet Guvakova, Marina A.
author_sort Guvakova, Marina A.
collection PubMed
description In clinical research, determining cutoff values for continuous variables in test results remains challenging, particularly when considering candidate biomarkers or therapeutic targets for disease. Distribution of a continuous variable into two populations is known as dichotomization and has been commonly used in clinical studies. We recently reported a new method for determining multiple cutoffs for continuous variables. The development of this original approach was based on fitting Gaussian Mixture Models (GMM) onto real-world clinical data. We also explored how to leverage Bayesian probability to minimize uncertainty while classifying individual patients into respective subpopulations. In addition, we investigated the performance of the proposed method for the distribution of classical prognostic markers in breast cancer. Finally, we applied the proposed method to analyze a candidate marker and a target for cancer therapy. Here, we present an overview of this method and our prospects for its implementation in biomedical and clinical research.
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spelling pubmed-69599292020-01-24 Improving patient classification and biomarker assessment using Gaussian Mixture Models and Bayes’ rule Guvakova, Marina A. Oncoscience Research Perspective In clinical research, determining cutoff values for continuous variables in test results remains challenging, particularly when considering candidate biomarkers or therapeutic targets for disease. Distribution of a continuous variable into two populations is known as dichotomization and has been commonly used in clinical studies. We recently reported a new method for determining multiple cutoffs for continuous variables. The development of this original approach was based on fitting Gaussian Mixture Models (GMM) onto real-world clinical data. We also explored how to leverage Bayesian probability to minimize uncertainty while classifying individual patients into respective subpopulations. In addition, we investigated the performance of the proposed method for the distribution of classical prognostic markers in breast cancer. Finally, we applied the proposed method to analyze a candidate marker and a target for cancer therapy. Here, we present an overview of this method and our prospects for its implementation in biomedical and clinical research. Impact Journals LLC 2019-12-23 /pmc/articles/PMC6959929/ /pubmed/31984216 http://dx.doi.org/10.18632/oncoscience.494 Text en Copyright: © 2019 Guvakova http://creativecommons.org/licenses/by/3.0/ This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Research Perspective
Guvakova, Marina A.
Improving patient classification and biomarker assessment using Gaussian Mixture Models and Bayes’ rule
title Improving patient classification and biomarker assessment using Gaussian Mixture Models and Bayes’ rule
title_full Improving patient classification and biomarker assessment using Gaussian Mixture Models and Bayes’ rule
title_fullStr Improving patient classification and biomarker assessment using Gaussian Mixture Models and Bayes’ rule
title_full_unstemmed Improving patient classification and biomarker assessment using Gaussian Mixture Models and Bayes’ rule
title_short Improving patient classification and biomarker assessment using Gaussian Mixture Models and Bayes’ rule
title_sort improving patient classification and biomarker assessment using gaussian mixture models and bayes’ rule
topic Research Perspective
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6959929/
https://www.ncbi.nlm.nih.gov/pubmed/31984216
http://dx.doi.org/10.18632/oncoscience.494
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