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Improving patient classification and biomarker assessment using Gaussian Mixture Models and Bayes’ rule
In clinical research, determining cutoff values for continuous variables in test results remains challenging, particularly when considering candidate biomarkers or therapeutic targets for disease. Distribution of a continuous variable into two populations is known as dichotomization and has been com...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Impact Journals LLC
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6959929/ https://www.ncbi.nlm.nih.gov/pubmed/31984216 http://dx.doi.org/10.18632/oncoscience.494 |
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author | Guvakova, Marina A. |
author_facet | Guvakova, Marina A. |
author_sort | Guvakova, Marina A. |
collection | PubMed |
description | In clinical research, determining cutoff values for continuous variables in test results remains challenging, particularly when considering candidate biomarkers or therapeutic targets for disease. Distribution of a continuous variable into two populations is known as dichotomization and has been commonly used in clinical studies. We recently reported a new method for determining multiple cutoffs for continuous variables. The development of this original approach was based on fitting Gaussian Mixture Models (GMM) onto real-world clinical data. We also explored how to leverage Bayesian probability to minimize uncertainty while classifying individual patients into respective subpopulations. In addition, we investigated the performance of the proposed method for the distribution of classical prognostic markers in breast cancer. Finally, we applied the proposed method to analyze a candidate marker and a target for cancer therapy. Here, we present an overview of this method and our prospects for its implementation in biomedical and clinical research. |
format | Online Article Text |
id | pubmed-6959929 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Impact Journals LLC |
record_format | MEDLINE/PubMed |
spelling | pubmed-69599292020-01-24 Improving patient classification and biomarker assessment using Gaussian Mixture Models and Bayes’ rule Guvakova, Marina A. Oncoscience Research Perspective In clinical research, determining cutoff values for continuous variables in test results remains challenging, particularly when considering candidate biomarkers or therapeutic targets for disease. Distribution of a continuous variable into two populations is known as dichotomization and has been commonly used in clinical studies. We recently reported a new method for determining multiple cutoffs for continuous variables. The development of this original approach was based on fitting Gaussian Mixture Models (GMM) onto real-world clinical data. We also explored how to leverage Bayesian probability to minimize uncertainty while classifying individual patients into respective subpopulations. In addition, we investigated the performance of the proposed method for the distribution of classical prognostic markers in breast cancer. Finally, we applied the proposed method to analyze a candidate marker and a target for cancer therapy. Here, we present an overview of this method and our prospects for its implementation in biomedical and clinical research. Impact Journals LLC 2019-12-23 /pmc/articles/PMC6959929/ /pubmed/31984216 http://dx.doi.org/10.18632/oncoscience.494 Text en Copyright: © 2019 Guvakova http://creativecommons.org/licenses/by/3.0/ This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Research Perspective Guvakova, Marina A. Improving patient classification and biomarker assessment using Gaussian Mixture Models and Bayes’ rule |
title | Improving patient classification and biomarker assessment using Gaussian Mixture Models and Bayes’ rule |
title_full | Improving patient classification and biomarker assessment using Gaussian Mixture Models and Bayes’ rule |
title_fullStr | Improving patient classification and biomarker assessment using Gaussian Mixture Models and Bayes’ rule |
title_full_unstemmed | Improving patient classification and biomarker assessment using Gaussian Mixture Models and Bayes’ rule |
title_short | Improving patient classification and biomarker assessment using Gaussian Mixture Models and Bayes’ rule |
title_sort | improving patient classification and biomarker assessment using gaussian mixture models and bayes’ rule |
topic | Research Perspective |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6959929/ https://www.ncbi.nlm.nih.gov/pubmed/31984216 http://dx.doi.org/10.18632/oncoscience.494 |
work_keys_str_mv | AT guvakovamarinaa improvingpatientclassificationandbiomarkerassessmentusinggaussianmixturemodelsandbayesrule |