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A highly sensitive trap vector system for isolating reporter cells and identification of responsive genes

We devised a versatile vector system for efficient isolation of reporter cells responding to a certain condition of interest. This system combines nontoxic GAL4-UAS and piggyBac transposon systems, allowing application to mammalian cells and improved expression of a fluorescent reporter protein for...

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Autores principales: Ishikawa, Kosuke, Kobayashi, Yuta, Wakabayashi, Yutaro, Watanabe, Shinya, Semba, Kentaro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6994077/
https://www.ncbi.nlm.nih.gov/pubmed/32161797
http://dx.doi.org/10.1093/biomethods/bpy003
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author Ishikawa, Kosuke
Kobayashi, Yuta
Wakabayashi, Yutaro
Watanabe, Shinya
Semba, Kentaro
author_facet Ishikawa, Kosuke
Kobayashi, Yuta
Wakabayashi, Yutaro
Watanabe, Shinya
Semba, Kentaro
author_sort Ishikawa, Kosuke
collection PubMed
description We devised a versatile vector system for efficient isolation of reporter cells responding to a certain condition of interest. This system combines nontoxic GAL4-UAS and piggyBac transposon systems, allowing application to mammalian cells and improved expression of a fluorescent reporter protein for cell sorting. Case studies under conditions of c-MYC gene induction or endoplasmic reticulum (ER) stress with thapsigargin on mouse or human cell lines confirmed easy and efficient isolation of responsive reporter cells. Sequence analyses of the integrated loci of the thapsigargin-responsive clones identified responsive genes including BiP and OSBPL9. OSBPL9 is a novel ER stress-responsive gene and we confirmed that endogenous mRNA expression of OSBPL9 is upregulated by thapsigargin, and is repressed by IRE1α inhibitors, 4μ8C and toyocamycin, but not significantly by a PERK inhibitor, GSK2656157. These results demonstrate that this approach can be used to discover novel genes regulated by any stimuli without the need for microarray analysis, and that it can concomitantly produce reporter cells without identification of stimuli-responsive promoter/enhancer elements. Therefore, this system has a variety of benefits for basic and clinical research.
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spelling pubmed-69940772020-03-11 A highly sensitive trap vector system for isolating reporter cells and identification of responsive genes Ishikawa, Kosuke Kobayashi, Yuta Wakabayashi, Yutaro Watanabe, Shinya Semba, Kentaro Biol Methods Protoc Methods Manuscript We devised a versatile vector system for efficient isolation of reporter cells responding to a certain condition of interest. This system combines nontoxic GAL4-UAS and piggyBac transposon systems, allowing application to mammalian cells and improved expression of a fluorescent reporter protein for cell sorting. Case studies under conditions of c-MYC gene induction or endoplasmic reticulum (ER) stress with thapsigargin on mouse or human cell lines confirmed easy and efficient isolation of responsive reporter cells. Sequence analyses of the integrated loci of the thapsigargin-responsive clones identified responsive genes including BiP and OSBPL9. OSBPL9 is a novel ER stress-responsive gene and we confirmed that endogenous mRNA expression of OSBPL9 is upregulated by thapsigargin, and is repressed by IRE1α inhibitors, 4μ8C and toyocamycin, but not significantly by a PERK inhibitor, GSK2656157. These results demonstrate that this approach can be used to discover novel genes regulated by any stimuli without the need for microarray analysis, and that it can concomitantly produce reporter cells without identification of stimuli-responsive promoter/enhancer elements. Therefore, this system has a variety of benefits for basic and clinical research. Oxford University Press 2018-04-24 /pmc/articles/PMC6994077/ /pubmed/32161797 http://dx.doi.org/10.1093/biomethods/bpy003 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Methods Manuscript
Ishikawa, Kosuke
Kobayashi, Yuta
Wakabayashi, Yutaro
Watanabe, Shinya
Semba, Kentaro
A highly sensitive trap vector system for isolating reporter cells and identification of responsive genes
title A highly sensitive trap vector system for isolating reporter cells and identification of responsive genes
title_full A highly sensitive trap vector system for isolating reporter cells and identification of responsive genes
title_fullStr A highly sensitive trap vector system for isolating reporter cells and identification of responsive genes
title_full_unstemmed A highly sensitive trap vector system for isolating reporter cells and identification of responsive genes
title_short A highly sensitive trap vector system for isolating reporter cells and identification of responsive genes
title_sort highly sensitive trap vector system for isolating reporter cells and identification of responsive genes
topic Methods Manuscript
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6994077/
https://www.ncbi.nlm.nih.gov/pubmed/32161797
http://dx.doi.org/10.1093/biomethods/bpy003
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