Performance and Accuracy of Four Open-Source Tools for In Silico Serotyping of Salmonella spp. Based on Whole-Genome Short-Read Sequencing Data

We compared the performance of four open-source in silico Salmonella typing tools (SeqSero, SeqSero2, Salmonella In Silico Typing Resource [SISTR], and Metric Oriented Sequence Typer [MOST]) to assess their potential for replacing laboratory serological testing with serovar predictions from whole-ge...

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Detalles Bibliográficos
Autores principales: Uelze, Laura, Borowiak, Maria, Deneke, Carlus, Szabó, István, Fischer, Jennie, Tausch, Simon H., Malorny, Burkhard
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2020
Materias:
Food Microbiology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7028957/
https://www.ncbi.nlm.nih.gov/pubmed/31862714
http://dx.doi.org/10.1128/AEM.02265-19

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7028957/
https://www.ncbi.nlm.nih.gov/pubmed/31862714
http://dx.doi.org/10.1128/AEM.02265-19

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