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Unique k-mers as Strain-Specific Barcodes for Phylogenetic Analysis and Natural Microbiome Profiling

The need for a comparative analysis of natural metagenomes stimulated the development of new methods for their taxonomic profiling. Alignment-free approaches based on the search for marker k-mers turned out to be capable of identifying not only species, but also strains of microorganisms with known...

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Detalles Bibliográficos
Autores principales: Panyukov, Valery V., Kiselev, Sergey S., Ozoline, Olga N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7037511/
https://www.ncbi.nlm.nih.gov/pubmed/32023871
http://dx.doi.org/10.3390/ijms21030944