Cargando…
Equiprobable discrete models of site-specific substitution rates underestimate the extent of rate variability
It is standard practice to model site-to-site variability of substitution rates by discretizing a continuous distribution into a small number, K, of equiprobable rate categories. We demonstrate that the variance of this discretized distribution has an upper bound determined solely by the choice of K...
Autores principales: | Mannino, Frank, Wisotsky, Sadie, Kosakovsky Pond, Sergei L., Muse, Spencer V. |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7051046/ https://www.ncbi.nlm.nih.gov/pubmed/32119689 http://dx.doi.org/10.1371/journal.pone.0229493 |
Ejemplares similares
-
Synonymous Site-to-Site Substitution Rate Variation Dramatically Inflates False Positive Rates of Selection Analyses: Ignore at Your Own Peril
por: Wisotsky, Sadie R, et al.
Publicado: (2020) -
Contrast-FEL—A Test for Differences in Selective Pressures at Individual Sites among Clades and Sets of Branches
por: Kosakovsky Pond, Sergei L, et al.
Publicado: (2020) -
Relative Evolutionary Rates in Proteins Are Largely Insensitive to the Substitution Model
por: Spielman, Stephanie J, et al.
Publicado: (2018) -
Benchmarking Multi-Rate Codon Models
por: Delport, Wayne, et al.
Publicado: (2010) -
Extra base hits: Widespread empirical support for instantaneous multiple-nucleotide changes
por: Lucaci, Alexander G., et al.
Publicado: (2021)