BLAMM: BLAS-based algorithm for finding position weight matrix occurrences in DNA sequences on CPUs and GPUs

BACKGROUND: The identification of all matches of a large set of position weight matrices (PWMs) in long DNA sequences requires significant computational resources for which a number of efficient yet complex algorithms have been proposed. RESULTS: We propose BLAMM, a simple and efficient tool inspire...

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Detalles Bibliográficos
Autor principal: Fostier, Jan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7068855/
https://www.ncbi.nlm.nih.gov/pubmed/32164557
http://dx.doi.org/10.1186/s12859-020-3348-6

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7068855/
https://www.ncbi.nlm.nih.gov/pubmed/32164557
http://dx.doi.org/10.1186/s12859-020-3348-6

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