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BLAMM: BLAS-based algorithm for finding position weight matrix occurrences in DNA sequences on CPUs and GPUs
BACKGROUND: The identification of all matches of a large set of position weight matrices (PWMs) in long DNA sequences requires significant computational resources for which a number of efficient yet complex algorithms have been proposed. RESULTS: We propose BLAMM, a simple and efficient tool inspire...
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
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BioMed Central
2020
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7068855/ https://www.ncbi.nlm.nih.gov/pubmed/32164557 http://dx.doi.org/10.1186/s12859-020-3348-6 |