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Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios

The distribution of fitness effects (DFE) defines how new mutations spread through an evolving population. The ratio of non-synonymous to synonymous mutations (dN/dS) has become a popular method to detect selection in somatic cells. However the link, in somatic evolution, between dN/dS values and fi...

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Autores principales: Williams, Marc J, Zapata, Luis, Werner, Benjamin, Barnes, Chris P, Sottoriva, Andrea, Graham, Trevor A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7105384/
https://www.ncbi.nlm.nih.gov/pubmed/32223898
http://dx.doi.org/10.7554/eLife.48714
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author Williams, Marc J
Zapata, Luis
Werner, Benjamin
Barnes, Chris P
Sottoriva, Andrea
Graham, Trevor A
author_facet Williams, Marc J
Zapata, Luis
Werner, Benjamin
Barnes, Chris P
Sottoriva, Andrea
Graham, Trevor A
author_sort Williams, Marc J
collection PubMed
description The distribution of fitness effects (DFE) defines how new mutations spread through an evolving population. The ratio of non-synonymous to synonymous mutations (dN/dS) has become a popular method to detect selection in somatic cells. However the link, in somatic evolution, between dN/dS values and fitness coefficients is missing. Here we present a quantitative model of somatic evolutionary dynamics that determines the selective coefficients of individual driver mutations from dN/dS estimates. We then measure the DFE for somatic mutant clones in ostensibly normal oesophagus and skin. We reveal a broad distribution of fitness effects, with the largest fitness increases found for TP53 and NOTCH1 mutants (proliferative bias 1–5%). This study provides the theoretical link between dN/dS values and selective coefficients in somatic evolution, and measures the DFE of mutations in human tissues.
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spelling pubmed-71053842020-04-01 Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios Williams, Marc J Zapata, Luis Werner, Benjamin Barnes, Chris P Sottoriva, Andrea Graham, Trevor A eLife Computational and Systems Biology The distribution of fitness effects (DFE) defines how new mutations spread through an evolving population. The ratio of non-synonymous to synonymous mutations (dN/dS) has become a popular method to detect selection in somatic cells. However the link, in somatic evolution, between dN/dS values and fitness coefficients is missing. Here we present a quantitative model of somatic evolutionary dynamics that determines the selective coefficients of individual driver mutations from dN/dS estimates. We then measure the DFE for somatic mutant clones in ostensibly normal oesophagus and skin. We reveal a broad distribution of fitness effects, with the largest fitness increases found for TP53 and NOTCH1 mutants (proliferative bias 1–5%). This study provides the theoretical link between dN/dS values and selective coefficients in somatic evolution, and measures the DFE of mutations in human tissues. eLife Sciences Publications, Ltd 2020-03-30 /pmc/articles/PMC7105384/ /pubmed/32223898 http://dx.doi.org/10.7554/eLife.48714 Text en © 2020, Williams et al http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Computational and Systems Biology
Williams, Marc J
Zapata, Luis
Werner, Benjamin
Barnes, Chris P
Sottoriva, Andrea
Graham, Trevor A
Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios
title Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios
title_full Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios
title_fullStr Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios
title_full_unstemmed Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios
title_short Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios
title_sort measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dn/ds ratios
topic Computational and Systems Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7105384/
https://www.ncbi.nlm.nih.gov/pubmed/32223898
http://dx.doi.org/10.7554/eLife.48714
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