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Synthetic biology based construction of biological activity-related library of fungal decalin-containing diterpenoid pyrones

A synthetic biology method based on heterologous biosynthesis coupled with genome mining is a promising approach for increasing the opportunities to rationally access natural product with novel structures and biological activities through total biosynthesis and combinatorial biosynthesis. Here, we d...

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Autores principales: Tsukada, Kento, Shinki, Shono, Kaneko, Akiho, Murakami, Kazuma, Irie, Kazuhiro, Murai, Masatoshi, Miyoshi, Hideto, Dan, Shingo, Kawaji, Kumi, Hayashi, Hironori, Kodama, Eiichi N., Hori, Aki, Salim, Emil, Kuraishi, Takayuki, Hirata, Naoya, Kanda, Yasunari, Asai, Teigo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7156458/
https://www.ncbi.nlm.nih.gov/pubmed/32286350
http://dx.doi.org/10.1038/s41467-020-15664-4
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author Tsukada, Kento
Shinki, Shono
Kaneko, Akiho
Murakami, Kazuma
Irie, Kazuhiro
Murai, Masatoshi
Miyoshi, Hideto
Dan, Shingo
Kawaji, Kumi
Hayashi, Hironori
Kodama, Eiichi N.
Hori, Aki
Salim, Emil
Kuraishi, Takayuki
Hirata, Naoya
Kanda, Yasunari
Asai, Teigo
author_facet Tsukada, Kento
Shinki, Shono
Kaneko, Akiho
Murakami, Kazuma
Irie, Kazuhiro
Murai, Masatoshi
Miyoshi, Hideto
Dan, Shingo
Kawaji, Kumi
Hayashi, Hironori
Kodama, Eiichi N.
Hori, Aki
Salim, Emil
Kuraishi, Takayuki
Hirata, Naoya
Kanda, Yasunari
Asai, Teigo
author_sort Tsukada, Kento
collection PubMed
description A synthetic biology method based on heterologous biosynthesis coupled with genome mining is a promising approach for increasing the opportunities to rationally access natural product with novel structures and biological activities through total biosynthesis and combinatorial biosynthesis. Here, we demonstrate the advantage of the synthetic biology method to explore biological activity-related chemical space through the comprehensive heterologous biosynthesis of fungal decalin-containing diterpenoid pyrones (DDPs). Genome mining reveals putative DDP biosynthetic gene clusters distributed in five fungal genera. In addition, we design extended DDP pathways by combinatorial biosynthesis. In total, ten DDP pathways, including five native pathways, four extended pathways and one shunt pathway, are heterologously reconstituted in a genetically tractable heterologous host, Aspergillus oryzae, resulting in the production of 22 DDPs, including 15 new analogues. We also demonstrate the advantage of expanding the diversity of DDPs to probe various bioactive molecules through a wide range of biological evaluations.
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spelling pubmed-71564582020-04-22 Synthetic biology based construction of biological activity-related library of fungal decalin-containing diterpenoid pyrones Tsukada, Kento Shinki, Shono Kaneko, Akiho Murakami, Kazuma Irie, Kazuhiro Murai, Masatoshi Miyoshi, Hideto Dan, Shingo Kawaji, Kumi Hayashi, Hironori Kodama, Eiichi N. Hori, Aki Salim, Emil Kuraishi, Takayuki Hirata, Naoya Kanda, Yasunari Asai, Teigo Nat Commun Article A synthetic biology method based on heterologous biosynthesis coupled with genome mining is a promising approach for increasing the opportunities to rationally access natural product with novel structures and biological activities through total biosynthesis and combinatorial biosynthesis. Here, we demonstrate the advantage of the synthetic biology method to explore biological activity-related chemical space through the comprehensive heterologous biosynthesis of fungal decalin-containing diterpenoid pyrones (DDPs). Genome mining reveals putative DDP biosynthetic gene clusters distributed in five fungal genera. In addition, we design extended DDP pathways by combinatorial biosynthesis. In total, ten DDP pathways, including five native pathways, four extended pathways and one shunt pathway, are heterologously reconstituted in a genetically tractable heterologous host, Aspergillus oryzae, resulting in the production of 22 DDPs, including 15 new analogues. We also demonstrate the advantage of expanding the diversity of DDPs to probe various bioactive molecules through a wide range of biological evaluations. Nature Publishing Group UK 2020-04-14 /pmc/articles/PMC7156458/ /pubmed/32286350 http://dx.doi.org/10.1038/s41467-020-15664-4 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Tsukada, Kento
Shinki, Shono
Kaneko, Akiho
Murakami, Kazuma
Irie, Kazuhiro
Murai, Masatoshi
Miyoshi, Hideto
Dan, Shingo
Kawaji, Kumi
Hayashi, Hironori
Kodama, Eiichi N.
Hori, Aki
Salim, Emil
Kuraishi, Takayuki
Hirata, Naoya
Kanda, Yasunari
Asai, Teigo
Synthetic biology based construction of biological activity-related library of fungal decalin-containing diterpenoid pyrones
title Synthetic biology based construction of biological activity-related library of fungal decalin-containing diterpenoid pyrones
title_full Synthetic biology based construction of biological activity-related library of fungal decalin-containing diterpenoid pyrones
title_fullStr Synthetic biology based construction of biological activity-related library of fungal decalin-containing diterpenoid pyrones
title_full_unstemmed Synthetic biology based construction of biological activity-related library of fungal decalin-containing diterpenoid pyrones
title_short Synthetic biology based construction of biological activity-related library of fungal decalin-containing diterpenoid pyrones
title_sort synthetic biology based construction of biological activity-related library of fungal decalin-containing diterpenoid pyrones
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7156458/
https://www.ncbi.nlm.nih.gov/pubmed/32286350
http://dx.doi.org/10.1038/s41467-020-15664-4
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