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Canadian polar bear population structure using genome‐wide markers

Predicting the consequences of environmental changes, including human‐mediated climate change on species, requires that we quantify range‐wide patterns of genetic diversity and identify the ecological, environmental, and historical factors that have contributed to it. Here, we generate baseline data...

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Autores principales: Jensen, Evelyn L., Tschritter, Christina, de Groot, Peter V. C., Hayward, Kristen M., Branigan, Marsha, Dyck, Markus, Clemente‐Carvalho, Rute B. G., Lougheed, Stephen C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7160183/
https://www.ncbi.nlm.nih.gov/pubmed/32313629
http://dx.doi.org/10.1002/ece3.6159
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author Jensen, Evelyn L.
Tschritter, Christina
de Groot, Peter V. C.
Hayward, Kristen M.
Branigan, Marsha
Dyck, Markus
Clemente‐Carvalho, Rute B. G.
Lougheed, Stephen C.
author_facet Jensen, Evelyn L.
Tschritter, Christina
de Groot, Peter V. C.
Hayward, Kristen M.
Branigan, Marsha
Dyck, Markus
Clemente‐Carvalho, Rute B. G.
Lougheed, Stephen C.
author_sort Jensen, Evelyn L.
collection PubMed
description Predicting the consequences of environmental changes, including human‐mediated climate change on species, requires that we quantify range‐wide patterns of genetic diversity and identify the ecological, environmental, and historical factors that have contributed to it. Here, we generate baseline data on polar bear population structure across most Canadian subpopulations (n = 358) using 13,488 genome‐wide single nucleotide polymorphisms (SNPs) identified with double‐digest restriction site‐associated DNA sequencing (ddRAD). Our ddRAD dataset showed three genetic clusters in the sampled Canadian range, congruent with previous studies based on microsatellites across the same regions; however, due to a lack of sampling in Norwegian Bay, we were unable to confirm the existence of a unique cluster in that subpopulation. These data on the genetic structure of polar bears using SNPs provide a detailed baseline against which future shifts in population structure can be assessed, and opportunities to develop new noninvasive tools for monitoring polar bears across their range.
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spelling pubmed-71601832020-04-20 Canadian polar bear population structure using genome‐wide markers Jensen, Evelyn L. Tschritter, Christina de Groot, Peter V. C. Hayward, Kristen M. Branigan, Marsha Dyck, Markus Clemente‐Carvalho, Rute B. G. Lougheed, Stephen C. Ecol Evol Original Research Predicting the consequences of environmental changes, including human‐mediated climate change on species, requires that we quantify range‐wide patterns of genetic diversity and identify the ecological, environmental, and historical factors that have contributed to it. Here, we generate baseline data on polar bear population structure across most Canadian subpopulations (n = 358) using 13,488 genome‐wide single nucleotide polymorphisms (SNPs) identified with double‐digest restriction site‐associated DNA sequencing (ddRAD). Our ddRAD dataset showed three genetic clusters in the sampled Canadian range, congruent with previous studies based on microsatellites across the same regions; however, due to a lack of sampling in Norwegian Bay, we were unable to confirm the existence of a unique cluster in that subpopulation. These data on the genetic structure of polar bears using SNPs provide a detailed baseline against which future shifts in population structure can be assessed, and opportunities to develop new noninvasive tools for monitoring polar bears across their range. John Wiley and Sons Inc. 2020-03-24 /pmc/articles/PMC7160183/ /pubmed/32313629 http://dx.doi.org/10.1002/ece3.6159 Text en © 2020 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Jensen, Evelyn L.
Tschritter, Christina
de Groot, Peter V. C.
Hayward, Kristen M.
Branigan, Marsha
Dyck, Markus
Clemente‐Carvalho, Rute B. G.
Lougheed, Stephen C.
Canadian polar bear population structure using genome‐wide markers
title Canadian polar bear population structure using genome‐wide markers
title_full Canadian polar bear population structure using genome‐wide markers
title_fullStr Canadian polar bear population structure using genome‐wide markers
title_full_unstemmed Canadian polar bear population structure using genome‐wide markers
title_short Canadian polar bear population structure using genome‐wide markers
title_sort canadian polar bear population structure using genome‐wide markers
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7160183/
https://www.ncbi.nlm.nih.gov/pubmed/32313629
http://dx.doi.org/10.1002/ece3.6159
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