Consistent RNA sequencing contamination in GTEx and other data sets

A challenge of next generation sequencing is read contamination. We use Genotype-Tissue Expression (GTEx) datasets and technical metadata along with RNA-seq datasets from other studies to understand factors that contribute to contamination. Here we report, of 48 analyzed tissues in GTEx, 26 have var...

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Detalles Bibliográficos
Autores principales: Nieuwenhuis, Tim O., Yang, Stephanie Y., Verma, Rohan X., Pillalamarri, Vamsee, Arking, Dan E., Rosenberg, Avi Z., McCall, Matthew N., Halushka, Marc K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7176728/
https://www.ncbi.nlm.nih.gov/pubmed/32321923
http://dx.doi.org/10.1038/s41467-020-15821-9

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7176728/
https://www.ncbi.nlm.nih.gov/pubmed/32321923
http://dx.doi.org/10.1038/s41467-020-15821-9

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