PaSiT: a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing

MOTIVATION: One of the most widespread methods used in taxonomy studies to distinguish between strains or taxa is the calculation of average nucleotide identity. It requires a computationally expensive alignment step and is therefore not suitable for large-scale comparisons. Short oligonucleotide-ba...

Descripción completa

Detalles Bibliográficos
Autores principales: Goussarov, Gleb, Cleenwerck, Ilse, Mysara, Mohamed, Leys, Natalie, Monsieurs, Pieter, Tahon, Guillaume, Carlier, Aurélien, Vandamme, Peter, Van Houdt, Rob
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Original Papers
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7178395/
https://www.ncbi.nlm.nih.gov/pubmed/31899493
http://dx.doi.org/10.1093/bioinformatics/btz964

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7178395/
https://www.ncbi.nlm.nih.gov/pubmed/31899493
http://dx.doi.org/10.1093/bioinformatics/btz964

Ejemplares similares