Cargando…
PlasGUN: gene prediction in plasmid metagenomic short reads using deep learning
SUMMARY: We present the first tool of gene prediction, PlasGUN, for plasmid metagenomic short-read data. The tool, developed based on deep learning algorithm of multiple input Convolutional Neural Network, demonstrates much better performance when tested on a benchmark dataset of artificial short re...
Autores principales: | Fang, Zhencheng, Tan, Jie, Wu, Shufang, Li, Mo, Wang, Chunhui, Liu, Yongchu, Zhu, Huaiqiu |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7214025/ https://www.ncbi.nlm.nih.gov/pubmed/32091572 http://dx.doi.org/10.1093/bioinformatics/btaa103 |
Ejemplares similares
-
PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learning
por: Fang, Zhencheng, et al.
Publicado: (2019) -
HoPhage: an ab initio tool for identifying hosts of phage fragments from metaviromes
por: Tan, Jie, et al.
Publicado: (2021) -
gplas: a comprehensive tool for plasmid analysis using short-read graphs
por: Arredondo-Alonso, Sergio, et al.
Publicado: (2020) -
PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures
por: Krawczyk, Pawel S, et al.
Publicado: (2018) -
PlasClass improves plasmid sequence classification
por: Pellow, David, et al.
Publicado: (2020)