Cargando…

Distinct metabolic states of a cell guide alternate fates of mutational buffering through altered proteostasis

Metabolic changes alter the cellular milieu; can this also change intracellular protein folding? Since proteostasis can modulate mutational buffering, if change in metabolism has the ability to change protein folding, arguably, it should also alter mutational buffering. Here we find that altered cel...

Descripción completa

Detalles Bibliográficos
Autores principales: Verma, Kanika, Saxena, Kanika, Donaka, Rajashekar, Chaphalkar, Aseem, Rai, Manish Kumar, Shukla, Anurag, Zaidi, Zainab, Dandage, Rohan, Shanmugam, Dhanasekaran, Chakraborty, Kausik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7286901/
https://www.ncbi.nlm.nih.gov/pubmed/32522991
http://dx.doi.org/10.1038/s41467-020-16804-6
_version_ 1783544954206814208
author Verma, Kanika
Saxena, Kanika
Donaka, Rajashekar
Chaphalkar, Aseem
Rai, Manish Kumar
Shukla, Anurag
Zaidi, Zainab
Dandage, Rohan
Shanmugam, Dhanasekaran
Chakraborty, Kausik
author_facet Verma, Kanika
Saxena, Kanika
Donaka, Rajashekar
Chaphalkar, Aseem
Rai, Manish Kumar
Shukla, Anurag
Zaidi, Zainab
Dandage, Rohan
Shanmugam, Dhanasekaran
Chakraborty, Kausik
author_sort Verma, Kanika
collection PubMed
description Metabolic changes alter the cellular milieu; can this also change intracellular protein folding? Since proteostasis can modulate mutational buffering, if change in metabolism has the ability to change protein folding, arguably, it should also alter mutational buffering. Here we find that altered cellular metabolic states in E. coli buffer distinct mutations on model proteins. Buffered-mutants have folding problems in vivo and are differently chaperoned in different metabolic states. Notably, this assistance is dependent upon the metabolites and not on the increase in canonical chaperone machineries. Being able to reconstitute the folding assistance afforded by metabolites in vitro, we propose that changes in metabolite concentrations have the potential to alter protein folding capacity. Collectively, we unravel that the metabolite pools are bona fide members of proteostasis and aid in mutational buffering. Given the plasticity in cellular metabolism, we posit that metabolic alterations may play an important role in cellular proteostasis.
format Online
Article
Text
id pubmed-7286901
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-72869012020-06-16 Distinct metabolic states of a cell guide alternate fates of mutational buffering through altered proteostasis Verma, Kanika Saxena, Kanika Donaka, Rajashekar Chaphalkar, Aseem Rai, Manish Kumar Shukla, Anurag Zaidi, Zainab Dandage, Rohan Shanmugam, Dhanasekaran Chakraborty, Kausik Nat Commun Article Metabolic changes alter the cellular milieu; can this also change intracellular protein folding? Since proteostasis can modulate mutational buffering, if change in metabolism has the ability to change protein folding, arguably, it should also alter mutational buffering. Here we find that altered cellular metabolic states in E. coli buffer distinct mutations on model proteins. Buffered-mutants have folding problems in vivo and are differently chaperoned in different metabolic states. Notably, this assistance is dependent upon the metabolites and not on the increase in canonical chaperone machineries. Being able to reconstitute the folding assistance afforded by metabolites in vitro, we propose that changes in metabolite concentrations have the potential to alter protein folding capacity. Collectively, we unravel that the metabolite pools are bona fide members of proteostasis and aid in mutational buffering. Given the plasticity in cellular metabolism, we posit that metabolic alterations may play an important role in cellular proteostasis. Nature Publishing Group UK 2020-06-10 /pmc/articles/PMC7286901/ /pubmed/32522991 http://dx.doi.org/10.1038/s41467-020-16804-6 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Verma, Kanika
Saxena, Kanika
Donaka, Rajashekar
Chaphalkar, Aseem
Rai, Manish Kumar
Shukla, Anurag
Zaidi, Zainab
Dandage, Rohan
Shanmugam, Dhanasekaran
Chakraborty, Kausik
Distinct metabolic states of a cell guide alternate fates of mutational buffering through altered proteostasis
title Distinct metabolic states of a cell guide alternate fates of mutational buffering through altered proteostasis
title_full Distinct metabolic states of a cell guide alternate fates of mutational buffering through altered proteostasis
title_fullStr Distinct metabolic states of a cell guide alternate fates of mutational buffering through altered proteostasis
title_full_unstemmed Distinct metabolic states of a cell guide alternate fates of mutational buffering through altered proteostasis
title_short Distinct metabolic states of a cell guide alternate fates of mutational buffering through altered proteostasis
title_sort distinct metabolic states of a cell guide alternate fates of mutational buffering through altered proteostasis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7286901/
https://www.ncbi.nlm.nih.gov/pubmed/32522991
http://dx.doi.org/10.1038/s41467-020-16804-6
work_keys_str_mv AT vermakanika distinctmetabolicstatesofacellguidealternatefatesofmutationalbufferingthroughalteredproteostasis
AT saxenakanika distinctmetabolicstatesofacellguidealternatefatesofmutationalbufferingthroughalteredproteostasis
AT donakarajashekar distinctmetabolicstatesofacellguidealternatefatesofmutationalbufferingthroughalteredproteostasis
AT chaphalkaraseem distinctmetabolicstatesofacellguidealternatefatesofmutationalbufferingthroughalteredproteostasis
AT raimanishkumar distinctmetabolicstatesofacellguidealternatefatesofmutationalbufferingthroughalteredproteostasis
AT shuklaanurag distinctmetabolicstatesofacellguidealternatefatesofmutationalbufferingthroughalteredproteostasis
AT zaidizainab distinctmetabolicstatesofacellguidealternatefatesofmutationalbufferingthroughalteredproteostasis
AT dandagerohan distinctmetabolicstatesofacellguidealternatefatesofmutationalbufferingthroughalteredproteostasis
AT shanmugamdhanasekaran distinctmetabolicstatesofacellguidealternatefatesofmutationalbufferingthroughalteredproteostasis
AT chakrabortykausik distinctmetabolicstatesofacellguidealternatefatesofmutationalbufferingthroughalteredproteostasis