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Trypsin cleavage sites are highly unlikely to occur in celiac-causing restricted epitopes

To assess risk, the European Food Safety Authority requires that the amino-acid sequences of newly expressed proteins in genetically engineered (GE) crops should be searched for partial matches with 9-mer restricted epitopes known to cause celiac disease. None of the 26 known celiac-causing 9-mer ep...

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Autores principales: Herman, Rod A., Song, Ping, Mirsky, Henry P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7289517/
https://www.ncbi.nlm.nih.gov/pubmed/31743058
http://dx.doi.org/10.1080/21645698.2019.1692612
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author Herman, Rod A.
Song, Ping
Mirsky, Henry P.
author_facet Herman, Rod A.
Song, Ping
Mirsky, Henry P.
author_sort Herman, Rod A.
collection PubMed
description To assess risk, the European Food Safety Authority requires that the amino-acid sequences of newly expressed proteins in genetically engineered (GE) crops should be searched for partial matches with 9-mer restricted epitopes known to cause celiac disease. None of the 26 known celiac-causing 9-mer epitopes contain an in-silico predicted trypsin cleavage site. The probability of this occurring by chance alone is 0.000056. Based on the absence of in-silico predicted trypsin cleavage sites within 9-mer epitopes known to cause celiac disease, it can be concluded with very high confidence that true celiac-causing epitopes are highly unlikely to contain in-silico predicted trypsin cleavage sites and that this criterion can reliably be used to exclude the risk that imperfect 9-mer peptide matches within newly expressed proteins from GE crops cause celiac disease.
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spelling pubmed-72895172020-11-19 Trypsin cleavage sites are highly unlikely to occur in celiac-causing restricted epitopes Herman, Rod A. Song, Ping Mirsky, Henry P. GM Crops Food Commentary To assess risk, the European Food Safety Authority requires that the amino-acid sequences of newly expressed proteins in genetically engineered (GE) crops should be searched for partial matches with 9-mer restricted epitopes known to cause celiac disease. None of the 26 known celiac-causing 9-mer epitopes contain an in-silico predicted trypsin cleavage site. The probability of this occurring by chance alone is 0.000056. Based on the absence of in-silico predicted trypsin cleavage sites within 9-mer epitopes known to cause celiac disease, it can be concluded with very high confidence that true celiac-causing epitopes are highly unlikely to contain in-silico predicted trypsin cleavage sites and that this criterion can reliably be used to exclude the risk that imperfect 9-mer peptide matches within newly expressed proteins from GE crops cause celiac disease. Taylor & Francis 2019-11-19 /pmc/articles/PMC7289517/ /pubmed/31743058 http://dx.doi.org/10.1080/21645698.2019.1692612 Text en © 2019 The Author(s). Published with license by Taylor & Francis Group, LLC. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives License (http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) ), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited, and is not altered, transformed, or built upon in any way.
spellingShingle Commentary
Herman, Rod A.
Song, Ping
Mirsky, Henry P.
Trypsin cleavage sites are highly unlikely to occur in celiac-causing restricted epitopes
title Trypsin cleavage sites are highly unlikely to occur in celiac-causing restricted epitopes
title_full Trypsin cleavage sites are highly unlikely to occur in celiac-causing restricted epitopes
title_fullStr Trypsin cleavage sites are highly unlikely to occur in celiac-causing restricted epitopes
title_full_unstemmed Trypsin cleavage sites are highly unlikely to occur in celiac-causing restricted epitopes
title_short Trypsin cleavage sites are highly unlikely to occur in celiac-causing restricted epitopes
title_sort trypsin cleavage sites are highly unlikely to occur in celiac-causing restricted epitopes
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7289517/
https://www.ncbi.nlm.nih.gov/pubmed/31743058
http://dx.doi.org/10.1080/21645698.2019.1692612
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