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H-Bond Surrogate-Stabilized Shortest Single-Turn α-Helices: sp(2) Constraints and Residue Preferences for the Highest α-Helicities

[Image: see text] Short α-helical sequences of proteins fail to maintain their native conformation when taken out of their protein context. Several covalent constraints have been designed, including the covalent H-bond surrogate (HBS)—where a peptide backbone i + 4 → i H-bond is replaced by a covale...

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Autores principales: Pal, Sunit, Banerjee, Shreya, Kumar, Ankur, Prabhakaran, Erode N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2020
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7301546/
https://www.ncbi.nlm.nih.gov/pubmed/32566857
http://dx.doi.org/10.1021/acsomega.0c01277
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author Pal, Sunit
Banerjee, Shreya
Kumar, Ankur
Prabhakaran, Erode N.
author_facet Pal, Sunit
Banerjee, Shreya
Kumar, Ankur
Prabhakaran, Erode N.
author_sort Pal, Sunit
collection PubMed
description [Image: see text] Short α-helical sequences of proteins fail to maintain their native conformation when taken out of their protein context. Several covalent constraints have been designed, including the covalent H-bond surrogate (HBS)—where a peptide backbone i + 4 → i H-bond is replaced by a covalent surrogate—to nucleate α-helix in short sequences (>7 < 15 amino acids). But constraining the shortest sequences (four amino acids) into a single α-helical turn is still a significant challenge. Here, we introduce an HBS model that can be placed in unstructured tetrapeptides without excising any of its residues, and that biases them predominantly into remarkably stable single α-helical turns in varying solvents, pH values, and temperatures. Circular dichroism (CD), Fourier transform infrared (FT-IR) absorption, one-dimensional (1D)-NMR, two-dimensional (2D)-NMR spectral and computational analyses of the HBS-constrained tetrapeptide analogues reveal that (a) the number of sp(2) atoms in the HBS-constrained backbone influences their predominance and rigidity in the α-helical conformation; and (b) residue preferences at the unnatural HBS-constrained positions influence their α-helicities, with Moc[GFA]G-OMe (1a) showing the highest known α-helicity (θ(n→π*MRE) ∼−25.3 × 10(3) deg cm(2) dmol(–1) at 228 nm) for a single α-helical turn. Current findings benefit chemical biological applications desiring predictable access to single α-helical turns in tetrapeptides.
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spelling pubmed-73015462020-06-19 H-Bond Surrogate-Stabilized Shortest Single-Turn α-Helices: sp(2) Constraints and Residue Preferences for the Highest α-Helicities Pal, Sunit Banerjee, Shreya Kumar, Ankur Prabhakaran, Erode N. ACS Omega [Image: see text] Short α-helical sequences of proteins fail to maintain their native conformation when taken out of their protein context. Several covalent constraints have been designed, including the covalent H-bond surrogate (HBS)—where a peptide backbone i + 4 → i H-bond is replaced by a covalent surrogate—to nucleate α-helix in short sequences (>7 < 15 amino acids). But constraining the shortest sequences (four amino acids) into a single α-helical turn is still a significant challenge. Here, we introduce an HBS model that can be placed in unstructured tetrapeptides without excising any of its residues, and that biases them predominantly into remarkably stable single α-helical turns in varying solvents, pH values, and temperatures. Circular dichroism (CD), Fourier transform infrared (FT-IR) absorption, one-dimensional (1D)-NMR, two-dimensional (2D)-NMR spectral and computational analyses of the HBS-constrained tetrapeptide analogues reveal that (a) the number of sp(2) atoms in the HBS-constrained backbone influences their predominance and rigidity in the α-helical conformation; and (b) residue preferences at the unnatural HBS-constrained positions influence their α-helicities, with Moc[GFA]G-OMe (1a) showing the highest known α-helicity (θ(n→π*MRE) ∼−25.3 × 10(3) deg cm(2) dmol(–1) at 228 nm) for a single α-helical turn. Current findings benefit chemical biological applications desiring predictable access to single α-helical turns in tetrapeptides. American Chemical Society 2020-06-02 /pmc/articles/PMC7301546/ /pubmed/32566857 http://dx.doi.org/10.1021/acsomega.0c01277 Text en Copyright © 2020 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Pal, Sunit
Banerjee, Shreya
Kumar, Ankur
Prabhakaran, Erode N.
H-Bond Surrogate-Stabilized Shortest Single-Turn α-Helices: sp(2) Constraints and Residue Preferences for the Highest α-Helicities
title H-Bond Surrogate-Stabilized Shortest Single-Turn α-Helices: sp(2) Constraints and Residue Preferences for the Highest α-Helicities
title_full H-Bond Surrogate-Stabilized Shortest Single-Turn α-Helices: sp(2) Constraints and Residue Preferences for the Highest α-Helicities
title_fullStr H-Bond Surrogate-Stabilized Shortest Single-Turn α-Helices: sp(2) Constraints and Residue Preferences for the Highest α-Helicities
title_full_unstemmed H-Bond Surrogate-Stabilized Shortest Single-Turn α-Helices: sp(2) Constraints and Residue Preferences for the Highest α-Helicities
title_short H-Bond Surrogate-Stabilized Shortest Single-Turn α-Helices: sp(2) Constraints and Residue Preferences for the Highest α-Helicities
title_sort h-bond surrogate-stabilized shortest single-turn α-helices: sp(2) constraints and residue preferences for the highest α-helicities
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7301546/
https://www.ncbi.nlm.nih.gov/pubmed/32566857
http://dx.doi.org/10.1021/acsomega.0c01277
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