Cargando…

X-ray diffraction using focused-ion-beam-prepared single crystals

High-quality single-crystal X-ray diffraction measurements are a prerequisite for obtaining precise and reliable structure data and electron densities. The single crystal should therefore fulfill several conditions, of which a regular defined shape is of particularly high importance for compounds co...

Descripción completa

Detalles Bibliográficos
Autores principales: Weigel, Tina, Funke, Claudia, Zschornak, Matthias, Behm, Thomas, Stöcker, Hartmut, Leisegang, Tilmann, Meyer, Dirk C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7312134/
https://www.ncbi.nlm.nih.gov/pubmed/32684876
http://dx.doi.org/10.1107/S1600576720003143
_version_ 1783549665941127168
author Weigel, Tina
Funke, Claudia
Zschornak, Matthias
Behm, Thomas
Stöcker, Hartmut
Leisegang, Tilmann
Meyer, Dirk C.
author_facet Weigel, Tina
Funke, Claudia
Zschornak, Matthias
Behm, Thomas
Stöcker, Hartmut
Leisegang, Tilmann
Meyer, Dirk C.
author_sort Weigel, Tina
collection PubMed
description High-quality single-crystal X-ray diffraction measurements are a prerequisite for obtaining precise and reliable structure data and electron densities. The single crystal should therefore fulfill several conditions, of which a regular defined shape is of particularly high importance for compounds consisting of heavy elements with high X-ray absorption coefficients. The absorption of X-rays passing through a 50 µm-thick LiNbO(3) crystal can reduce the transmission of Mo Kα radiation by several tens of percent, which makes an absorption correction of the reflection intensities necessary. In order to reduce ambiguities concerning the shape of a crystal, used for the necessary absorption correction, a method for preparation of regularly shaped single crystals out of large samples is presented and evaluated. This method utilizes a focused ion beam to cut crystals with defined size and shape reproducibly and carefully without splintering. For evaluation, a single-crystal X-ray diffraction study using a laboratory diffractometer is presented, comparing differently prepared LiNbO(3) crystals originating from the same macroscopic crystal plate. Results of the data reduction, structure refinement and electron density reconstruction indicate qualitatively similar values for all prepared crystals. Thus, the different preparation techniques have a smaller impact than expected. However, the atomic coordinates, electron densities and atomic charges are supposed to be more reliable since the focused-ion-beam-prepared crystal exhibits the smallest extinction influences. This preparation technique is especially recommended for susceptible samples, for cases where a minimal invasive preparation procedure is needed, and for the preparation of crystals from specific areas, complex material architectures and materials that cannot be prepared with common methods (breaking or grinding).
format Online
Article
Text
id pubmed-7312134
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher International Union of Crystallography
record_format MEDLINE/PubMed
spelling pubmed-73121342020-07-16 X-ray diffraction using focused-ion-beam-prepared single crystals Weigel, Tina Funke, Claudia Zschornak, Matthias Behm, Thomas Stöcker, Hartmut Leisegang, Tilmann Meyer, Dirk C. J Appl Crystallogr Research Papers High-quality single-crystal X-ray diffraction measurements are a prerequisite for obtaining precise and reliable structure data and electron densities. The single crystal should therefore fulfill several conditions, of which a regular defined shape is of particularly high importance for compounds consisting of heavy elements with high X-ray absorption coefficients. The absorption of X-rays passing through a 50 µm-thick LiNbO(3) crystal can reduce the transmission of Mo Kα radiation by several tens of percent, which makes an absorption correction of the reflection intensities necessary. In order to reduce ambiguities concerning the shape of a crystal, used for the necessary absorption correction, a method for preparation of regularly shaped single crystals out of large samples is presented and evaluated. This method utilizes a focused ion beam to cut crystals with defined size and shape reproducibly and carefully without splintering. For evaluation, a single-crystal X-ray diffraction study using a laboratory diffractometer is presented, comparing differently prepared LiNbO(3) crystals originating from the same macroscopic crystal plate. Results of the data reduction, structure refinement and electron density reconstruction indicate qualitatively similar values for all prepared crystals. Thus, the different preparation techniques have a smaller impact than expected. However, the atomic coordinates, electron densities and atomic charges are supposed to be more reliable since the focused-ion-beam-prepared crystal exhibits the smallest extinction influences. This preparation technique is especially recommended for susceptible samples, for cases where a minimal invasive preparation procedure is needed, and for the preparation of crystals from specific areas, complex material architectures and materials that cannot be prepared with common methods (breaking or grinding). International Union of Crystallography 2020-04-14 /pmc/articles/PMC7312134/ /pubmed/32684876 http://dx.doi.org/10.1107/S1600576720003143 Text en © Tina Weigel et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Research Papers
Weigel, Tina
Funke, Claudia
Zschornak, Matthias
Behm, Thomas
Stöcker, Hartmut
Leisegang, Tilmann
Meyer, Dirk C.
X-ray diffraction using focused-ion-beam-prepared single crystals
title X-ray diffraction using focused-ion-beam-prepared single crystals
title_full X-ray diffraction using focused-ion-beam-prepared single crystals
title_fullStr X-ray diffraction using focused-ion-beam-prepared single crystals
title_full_unstemmed X-ray diffraction using focused-ion-beam-prepared single crystals
title_short X-ray diffraction using focused-ion-beam-prepared single crystals
title_sort x-ray diffraction using focused-ion-beam-prepared single crystals
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7312134/
https://www.ncbi.nlm.nih.gov/pubmed/32684876
http://dx.doi.org/10.1107/S1600576720003143
work_keys_str_mv AT weigeltina xraydiffractionusingfocusedionbeampreparedsinglecrystals
AT funkeclaudia xraydiffractionusingfocusedionbeampreparedsinglecrystals
AT zschornakmatthias xraydiffractionusingfocusedionbeampreparedsinglecrystals
AT behmthomas xraydiffractionusingfocusedionbeampreparedsinglecrystals
AT stockerhartmut xraydiffractionusingfocusedionbeampreparedsinglecrystals
AT leisegangtilmann xraydiffractionusingfocusedionbeampreparedsinglecrystals
AT meyerdirkc xraydiffractionusingfocusedionbeampreparedsinglecrystals