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X-ray diffraction using focused-ion-beam-prepared single crystals
High-quality single-crystal X-ray diffraction measurements are a prerequisite for obtaining precise and reliable structure data and electron densities. The single crystal should therefore fulfill several conditions, of which a regular defined shape is of particularly high importance for compounds co...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7312134/ https://www.ncbi.nlm.nih.gov/pubmed/32684876 http://dx.doi.org/10.1107/S1600576720003143 |
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author | Weigel, Tina Funke, Claudia Zschornak, Matthias Behm, Thomas Stöcker, Hartmut Leisegang, Tilmann Meyer, Dirk C. |
author_facet | Weigel, Tina Funke, Claudia Zschornak, Matthias Behm, Thomas Stöcker, Hartmut Leisegang, Tilmann Meyer, Dirk C. |
author_sort | Weigel, Tina |
collection | PubMed |
description | High-quality single-crystal X-ray diffraction measurements are a prerequisite for obtaining precise and reliable structure data and electron densities. The single crystal should therefore fulfill several conditions, of which a regular defined shape is of particularly high importance for compounds consisting of heavy elements with high X-ray absorption coefficients. The absorption of X-rays passing through a 50 µm-thick LiNbO(3) crystal can reduce the transmission of Mo Kα radiation by several tens of percent, which makes an absorption correction of the reflection intensities necessary. In order to reduce ambiguities concerning the shape of a crystal, used for the necessary absorption correction, a method for preparation of regularly shaped single crystals out of large samples is presented and evaluated. This method utilizes a focused ion beam to cut crystals with defined size and shape reproducibly and carefully without splintering. For evaluation, a single-crystal X-ray diffraction study using a laboratory diffractometer is presented, comparing differently prepared LiNbO(3) crystals originating from the same macroscopic crystal plate. Results of the data reduction, structure refinement and electron density reconstruction indicate qualitatively similar values for all prepared crystals. Thus, the different preparation techniques have a smaller impact than expected. However, the atomic coordinates, electron densities and atomic charges are supposed to be more reliable since the focused-ion-beam-prepared crystal exhibits the smallest extinction influences. This preparation technique is especially recommended for susceptible samples, for cases where a minimal invasive preparation procedure is needed, and for the preparation of crystals from specific areas, complex material architectures and materials that cannot be prepared with common methods (breaking or grinding). |
format | Online Article Text |
id | pubmed-7312134 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-73121342020-07-16 X-ray diffraction using focused-ion-beam-prepared single crystals Weigel, Tina Funke, Claudia Zschornak, Matthias Behm, Thomas Stöcker, Hartmut Leisegang, Tilmann Meyer, Dirk C. J Appl Crystallogr Research Papers High-quality single-crystal X-ray diffraction measurements are a prerequisite for obtaining precise and reliable structure data and electron densities. The single crystal should therefore fulfill several conditions, of which a regular defined shape is of particularly high importance for compounds consisting of heavy elements with high X-ray absorption coefficients. The absorption of X-rays passing through a 50 µm-thick LiNbO(3) crystal can reduce the transmission of Mo Kα radiation by several tens of percent, which makes an absorption correction of the reflection intensities necessary. In order to reduce ambiguities concerning the shape of a crystal, used for the necessary absorption correction, a method for preparation of regularly shaped single crystals out of large samples is presented and evaluated. This method utilizes a focused ion beam to cut crystals with defined size and shape reproducibly and carefully without splintering. For evaluation, a single-crystal X-ray diffraction study using a laboratory diffractometer is presented, comparing differently prepared LiNbO(3) crystals originating from the same macroscopic crystal plate. Results of the data reduction, structure refinement and electron density reconstruction indicate qualitatively similar values for all prepared crystals. Thus, the different preparation techniques have a smaller impact than expected. However, the atomic coordinates, electron densities and atomic charges are supposed to be more reliable since the focused-ion-beam-prepared crystal exhibits the smallest extinction influences. This preparation technique is especially recommended for susceptible samples, for cases where a minimal invasive preparation procedure is needed, and for the preparation of crystals from specific areas, complex material architectures and materials that cannot be prepared with common methods (breaking or grinding). International Union of Crystallography 2020-04-14 /pmc/articles/PMC7312134/ /pubmed/32684876 http://dx.doi.org/10.1107/S1600576720003143 Text en © Tina Weigel et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Papers Weigel, Tina Funke, Claudia Zschornak, Matthias Behm, Thomas Stöcker, Hartmut Leisegang, Tilmann Meyer, Dirk C. X-ray diffraction using focused-ion-beam-prepared single crystals |
title | X-ray diffraction using focused-ion-beam-prepared single crystals |
title_full | X-ray diffraction using focused-ion-beam-prepared single crystals |
title_fullStr | X-ray diffraction using focused-ion-beam-prepared single crystals |
title_full_unstemmed | X-ray diffraction using focused-ion-beam-prepared single crystals |
title_short | X-ray diffraction using focused-ion-beam-prepared single crystals |
title_sort | x-ray diffraction using focused-ion-beam-prepared single crystals |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7312134/ https://www.ncbi.nlm.nih.gov/pubmed/32684876 http://dx.doi.org/10.1107/S1600576720003143 |
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