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Structure Validation of G‐Rich RNAs in Noncoding Regions of the Human Genome
We present the rapid biophysical characterization of six previously reported putative G‐quadruplex‐forming RNAs from the 5′‐untranslated region (5′‐UTR) of silvestrol‐sensitive transcripts for investigation of their secondary structures. By NMR and CD spectroscopic analysis, we found that only a sin...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7318348/ https://www.ncbi.nlm.nih.gov/pubmed/31943589 http://dx.doi.org/10.1002/cbic.201900696 |
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author | Binas, Oliver Bessi, Irene Schwalbe, Harald |
author_facet | Binas, Oliver Bessi, Irene Schwalbe, Harald |
author_sort | Binas, Oliver |
collection | PubMed |
description | We present the rapid biophysical characterization of six previously reported putative G‐quadruplex‐forming RNAs from the 5′‐untranslated region (5′‐UTR) of silvestrol‐sensitive transcripts for investigation of their secondary structures. By NMR and CD spectroscopic analysis, we found that only a single sequence—[AGG](2)[CGG](2)C—folds into a single well‐defined G‐quadruplex structure. Sequences with longer poly‐G strands form unspecific aggregates, whereas CGG‐repeat‐containing sequences exhibit a temperature‐dependent equilibrium between a hairpin and a G‐quadruplex structure. The applied experimental strategy is fast and provides robust readout for G‐quadruplex‐forming capacities of RNA oligomers. |
format | Online Article Text |
id | pubmed-7318348 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-73183482020-06-29 Structure Validation of G‐Rich RNAs in Noncoding Regions of the Human Genome Binas, Oliver Bessi, Irene Schwalbe, Harald Chembiochem Full Papers We present the rapid biophysical characterization of six previously reported putative G‐quadruplex‐forming RNAs from the 5′‐untranslated region (5′‐UTR) of silvestrol‐sensitive transcripts for investigation of their secondary structures. By NMR and CD spectroscopic analysis, we found that only a single sequence—[AGG](2)[CGG](2)C—folds into a single well‐defined G‐quadruplex structure. Sequences with longer poly‐G strands form unspecific aggregates, whereas CGG‐repeat‐containing sequences exhibit a temperature‐dependent equilibrium between a hairpin and a G‐quadruplex structure. The applied experimental strategy is fast and provides robust readout for G‐quadruplex‐forming capacities of RNA oligomers. John Wiley and Sons Inc. 2020-02-26 2020-06-02 /pmc/articles/PMC7318348/ /pubmed/31943589 http://dx.doi.org/10.1002/cbic.201900696 Text en © 2020 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Full Papers Binas, Oliver Bessi, Irene Schwalbe, Harald Structure Validation of G‐Rich RNAs in Noncoding Regions of the Human Genome |
title | Structure Validation of G‐Rich RNAs in Noncoding Regions of the Human Genome |
title_full | Structure Validation of G‐Rich RNAs in Noncoding Regions of the Human Genome |
title_fullStr | Structure Validation of G‐Rich RNAs in Noncoding Regions of the Human Genome |
title_full_unstemmed | Structure Validation of G‐Rich RNAs in Noncoding Regions of the Human Genome |
title_short | Structure Validation of G‐Rich RNAs in Noncoding Regions of the Human Genome |
title_sort | structure validation of g‐rich rnas in noncoding regions of the human genome |
topic | Full Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7318348/ https://www.ncbi.nlm.nih.gov/pubmed/31943589 http://dx.doi.org/10.1002/cbic.201900696 |
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