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Structure Validation of G‐Rich RNAs in Noncoding Regions of the Human Genome

We present the rapid biophysical characterization of six previously reported putative G‐quadruplex‐forming RNAs from the 5′‐untranslated region (5′‐UTR) of silvestrol‐sensitive transcripts for investigation of their secondary structures. By NMR and CD spectroscopic analysis, we found that only a sin...

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Detalles Bibliográficos
Autores principales: Binas, Oliver, Bessi, Irene, Schwalbe, Harald
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7318348/
https://www.ncbi.nlm.nih.gov/pubmed/31943589
http://dx.doi.org/10.1002/cbic.201900696
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author Binas, Oliver
Bessi, Irene
Schwalbe, Harald
author_facet Binas, Oliver
Bessi, Irene
Schwalbe, Harald
author_sort Binas, Oliver
collection PubMed
description We present the rapid biophysical characterization of six previously reported putative G‐quadruplex‐forming RNAs from the 5′‐untranslated region (5′‐UTR) of silvestrol‐sensitive transcripts for investigation of their secondary structures. By NMR and CD spectroscopic analysis, we found that only a single sequence—[AGG](2)[CGG](2)C—folds into a single well‐defined G‐quadruplex structure. Sequences with longer poly‐G strands form unspecific aggregates, whereas CGG‐repeat‐containing sequences exhibit a temperature‐dependent equilibrium between a hairpin and a G‐quadruplex structure. The applied experimental strategy is fast and provides robust readout for G‐quadruplex‐forming capacities of RNA oligomers.
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spelling pubmed-73183482020-06-29 Structure Validation of G‐Rich RNAs in Noncoding Regions of the Human Genome Binas, Oliver Bessi, Irene Schwalbe, Harald Chembiochem Full Papers We present the rapid biophysical characterization of six previously reported putative G‐quadruplex‐forming RNAs from the 5′‐untranslated region (5′‐UTR) of silvestrol‐sensitive transcripts for investigation of their secondary structures. By NMR and CD spectroscopic analysis, we found that only a single sequence—[AGG](2)[CGG](2)C—folds into a single well‐defined G‐quadruplex structure. Sequences with longer poly‐G strands form unspecific aggregates, whereas CGG‐repeat‐containing sequences exhibit a temperature‐dependent equilibrium between a hairpin and a G‐quadruplex structure. The applied experimental strategy is fast and provides robust readout for G‐quadruplex‐forming capacities of RNA oligomers. John Wiley and Sons Inc. 2020-02-26 2020-06-02 /pmc/articles/PMC7318348/ /pubmed/31943589 http://dx.doi.org/10.1002/cbic.201900696 Text en © 2020 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Full Papers
Binas, Oliver
Bessi, Irene
Schwalbe, Harald
Structure Validation of G‐Rich RNAs in Noncoding Regions of the Human Genome
title Structure Validation of G‐Rich RNAs in Noncoding Regions of the Human Genome
title_full Structure Validation of G‐Rich RNAs in Noncoding Regions of the Human Genome
title_fullStr Structure Validation of G‐Rich RNAs in Noncoding Regions of the Human Genome
title_full_unstemmed Structure Validation of G‐Rich RNAs in Noncoding Regions of the Human Genome
title_short Structure Validation of G‐Rich RNAs in Noncoding Regions of the Human Genome
title_sort structure validation of g‐rich rnas in noncoding regions of the human genome
topic Full Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7318348/
https://www.ncbi.nlm.nih.gov/pubmed/31943589
http://dx.doi.org/10.1002/cbic.201900696
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