Cargando…

Total Functional Score of Enhancer Elements Identifies Lineage-Specific Enhancers That Drive Differentiation of Pancreatic Cells

The differentiation of embryonic stem cells into various lineages is highly dependent on the chromatin state of the genome and patterns of gene expression. To identify lineage-specific enhancers driving the differentiation of progenitors into pancreatic cells, we used a previously described computat...

Descripción completa

Detalles Bibliográficos
Autores principales:	Malladi, Venkat S., Nagari, Anusha, Franco, Hector L, Kraus, W Lee
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	SAGE Publications 2020
Materias:	Methods and Protocols
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7331761/ https://www.ncbi.nlm.nih.gov/pubmed/32655276 http://dx.doi.org/10.1177/1177932220938063

Ejemplares similares

OR26-5 Functional Analysis of Estrogen-Regulated Enhancer RNAs in Breast Cancer Cells
por: Hou, Tim, et al.
Publicado: (2019)

Dynamic assembly and activation of estrogen receptor α enhancers through coregulator switching
por: Murakami, Shino, et al.
Publicado: (2017)

Identifying clusters of cis-regulatory elements underpinning TAD structures and lineage-specific regulatory networks
por: Madani Tonekaboni, Seyed Ali, et al.
Publicado: (2019)

Enhancer transcription reveals subtype-specific gene expression programs controlling breast cancer pathogenesis
por: Franco, Hector L., et al.
Publicado: (2018)

Enhancer transcripts mark active estrogen receptor binding sites
por: Hah, Nasun, et al.
Publicado: (2013)

Identification and dynamic quantification of regulatory elements using total RNA
por: Duttke, Sascha H., et al.
Publicado: (2019)

TELS: A Novel Computational Framework for Identifying Motif Signatures of Transcribed Enhancers
por: Kleftogiannis, Dimitrios, et al.
Publicado: (2018)

SUN-192 Functional Interactions between Estrogen and Relaxin Signaling in the Myometrium
por: Tripathy, Sudeshna, et al.
Publicado: (2019)

A new class of temporarily phenotypic enhancers identified by CRISPR/Cas9-mediated genetic screening
por: Diao, Yarui, et al.
Publicado: (2016)

PPNet: Identifying Functional Association Networks by Phylogenetic Profiling of Prokaryotic Genomes
por: Li, Yangjie, et al.
Publicado: (2023)

Discovering human transcription factor physical interactions with genetic variants, novel DNA motifs, and repetitive elements using enhanced yeast one-hybrid assays
por: Shrestha, Shaleen, et al.
Publicado: (2019)

New RoxS sRNA Targets Identified in Bacillus subtilis by Pulsed SILAC
por: Allouche, Delphine, et al.
Publicado: (2023)

Using allele scores to identify confounding by reverse causation: studies of alcohol consumption as an exemplar
por: Sallis, Hannah M, et al.
Publicado: (2022)

Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations
por: Witherspoon, David J., et al.
Publicado: (2013)

Complementing 16S rRNA Gene Amplicon Sequencing with Total Bacterial Load To Infer Absolute Species Concentrations in the Vaginal Microbiome
por: Tettamanti Boshier, Florencia A., et al.
Publicado: (2020)

OR16-02 Histone ADP-Ribosylation Site Mutations As Oncogenic Drivers In Breast And Ovarian Cancers
por: Huang, Dan, et al.
Publicado: (2023)

Miswired Enhancer Logic Drives a Cancer of the Muscle Lineage
por: Gryder, Berkley E., et al.
Publicado: (2020)

cual-id: Globally Unique, Correctable, and Human-Friendly Sample Identifiers for Comparative Omics Studies
por: Chase, John H., et al.
Publicado: (2015)

A rapid and efficient strategy to identify and recover biosynthetic gene clusters from soil metagenomes
por: Negri, Timo, et al.
Publicado: (2022)

Whole-genome analysis of noncoding genetic variations identifies multiscale regulatory element perturbations associated with Hirschsprung disease
por: Fu, Alexander Xi, et al.
Publicado: (2020)

McEnhancer: predicting gene expression via semi-supervised assignment of enhancers to target genes
por: Hafez, Dina, et al.
Publicado: (2017)

Fast and scalable inference of multi-sample cancer lineages
por: Popic, Victoria, et al.
Publicado: (2015)

Efficient knock-in method enabling lineage tracing in zebrafish
por: Mi, Jiarui, et al.
Publicado: (2023)

Transposable elements as tissue-specific enhancers in cancers of endodermal lineage
por: Karttunen, Konsta, et al.
Publicado: (2023)

Using Restriction Endonuclease, Protection, Selection, and Amplification to Identify Preferred DNA-Binding Sequences of Microbial Transcription Factors
por: Barrows, John K., et al.
Publicado: (2023)

Evaluating Effects of AIV Infection Status on Ducks Using a Flow Cytometry-Based Differential Blood Count
por: Jax, Elinor, et al.
Publicado: (2023)

Enhanced and prolonged baculovirus-mediated expression by incorporating recombinase system and in cis elements: a comparative study
por: Sung, Li-Yu, et al.
Publicado: (2013)

Identifying Potentially Beneficial Genetic Mutations Associated with Monophyletic Selective Sweep and a Proof-of-Concept Study with Viral Genetic Data
por: Furuse, Yuki
Publicado: (2021)

Quantitative prediction of enhancer–promoter interactions
por: Belokopytova, Polina S., et al.
Publicado: (2020)

FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancer–promoter map
por: Hait, Tom Aharon, et al.
Publicado: (2018)

A Method for Identifying Mouse Pancreatic Ducts
por: Nakajima, Chiemi, et al.
Publicado: (2018)

Development of a weighted scoring system for the Electronic Driving Observation Schedule (eDOS)
por: Chen, Yu-Ting, et al.
Publicado: (2020)

A generic, cost-effective, and scalable cell lineage analysis platform
por: Biezuner, Tamir, et al.
Publicado: (2016)

Detecting ancient positive selection in humans using extended lineage sorting
por: Peyrégne, Stéphane, et al.
Publicado: (2017)

RETrace: simultaneous retrospective lineage tracing and methylation profiling of single cells
por: Wei, Christopher Jen-Yue, et al.
Publicado: (2020)

Quantitative-enhancer-FACS-seq (QeFS) reveals epistatic interactions among motifs within transcriptional enhancers in developing Drosophila tissue
por: Waters, Colin T., et al.
Publicado: (2021)

Inference of single-cell phylogenies from lineage tracing data using Cassiopeia
por: Jones, Matthew G, et al.
Publicado: (2020)

Early embryonic mutations reveal dynamics of somatic and germ cell lineages in mice
por: Uchimura, Arikuni, et al.
Publicado: (2022)

Designing Weights for Quartet-Based Methods When Data are Heterogeneous Across Lineages
por: Casanellas, Marta, et al.
Publicado: (2023)

The Mobile Element Locator Tool (MELT): population-scale mobile element discovery and biology
por: Gardner, Eugene J., et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_mn3hjidiqp9226et365kgqcevj