Cargando…

Nick-seq for single-nucleotide resolution genomic maps of DNA modifications and damage

DNA damage and epigenetic marks are well established to have profound influences on genome stability and cell phenotype, yet there are few technologies to obtain high-resolution genomic maps of the many types of chemical modifications of DNA. Here we present Nick-seq for quantitative, sensitive, and...

Descripción completa

Detalles Bibliográficos
Autores principales:	Cao, Bo, Wu, Xiaolin, Zhou, Jieliang, Wu, Hang, Liu, Lili, Zhang, Qinghua, DeMott, Michael S, Gu, Chen, Wang, Lianrong, You, Delin, Dedon, Peter C
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2020
Materias:	Genomics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7337925/ https://www.ncbi.nlm.nih.gov/pubmed/32484547 http://dx.doi.org/10.1093/nar/gkaa473

Ejemplares similares

Oxidation of phosphorothioate DNA modifications leads to lethal genomic instability
por: Kellner, Stefanie, et al.
Publicado: (2017)

Development of Methods Derived from Iodine-Induced Specific Cleavage for Identification and Quantitation of DNA Phosphorothioate Modifications
por: Zhu, Sucheng, et al.
Publicado: (2020)

The road less traveled: A new phosphorothioate antiviral defense mechanism discovered in Archaea
por: DeMott, Michael S., et al.
Publicado: (2019)

RNA-guided DNA base damage repair via DNA polymerase-mediated nick translation
por: Tsegay, Pawlos S, et al.
Publicado: (2022)

Quantitative mapping of the cellular small RNA landscape with AQRNA-seq
por: Hu, Jennifer F., et al.
Publicado: (2021)

Distinct genetic control of homologous recombination repair of Cas9-induced double-strand breaks, nicks and paired nicks
por: Vriend, Lianne E.M., et al.
Publicado: (2016)

GEN1 promotes Holliday junction resolution by a coordinated nick and counter-nick mechanism
por: Chan, Ying Wai, et al.
Publicado: (2015)

Nucleotide resolution profiling of m(3)C RNA modification by HAC-seq
por: Cui, Jia, et al.
Publicado: (2020)

A Quantitative Systems Approach Reveals Dynamic Control of tRNA Modifications during Cellular Stress
por: Chan, Clement T. Y., et al.
Publicado: (2010)

Correction: A Quantitative Systems Approach Reveals Dynamic Control of tRNA Modifications during Cellular Stress
por: Chan, Clement T. Y., et al.
Publicado: (2011)

Nanopore Sequencing for Detection and Characterization of Phosphorothioate Modifications in Native DNA Sequences
por: Wadley, Taylor, et al.
Publicado: (2022)

Nicking mechanism underlying the DNA phosphorothioate-sensing antiphage defense by SspE
por: Gao, Haiyan, et al.
Publicado: (2022)

The DNA-damage signature in Saccharomyces cerevisiae is associated with single-strand breaks in DNA
por: Fry, Rebecca C, et al.
Publicado: (2006)

Highly Predictive Reprogramming of tRNA Modifications Is Linked to Selective Expression of Codon-Biased Genes
por: Chan, Clement T. Y., et al.
Publicado: (2015)

Characterization at nucleotide resolution of the homogeneously staining region sites of insertion in two cancer cell lines
por: Gibaud, Anne, et al.
Publicado: (2013)

Ab initio identification of transcription start sites in the Rhesus macaque genome by histone modification and RNA-Seq
por: Liu, Yi, et al.
Publicado: (2011)

Epitranscriptomic mapping of RNA modifications at single-nucleotide resolution using rhodamine sequencing (Rho-seq)
por: Finet, Olivier, et al.
Publicado: (2022)

PRO-IP-seq Tracks Molecular Modifications of Engaged Pol II Complexes at Nucleotide Resolution
por: Vihervaara, Anniina, et al.
Publicado: (2023)

PRO-IP-seq tracks molecular modifications of engaged Pol II complexes at nucleotide resolution
por: Vihervaara, Anniina, et al.
Publicado: (2023)

DNA phosphorothioate modification—a new multi-functional epigenetic system in bacteria
por: Wang, Lianrong, et al.
Publicado: (2018)

Nick Adams
por: Hemingway, Ernest, 1899-1961
Publicado: (1974)

In the nick of time
por: Leslie, Mitch
Publicado: (2001)

“Nick Nax”
Publicado: (1859)

Engineering nicking enzymes that preferentially nick 5-methylcytosine-modified DNA
por: Gutjahr, Alice, et al.
Publicado: (2014)

Stimulation of homology-directed gene targeting at an endogenous human locus by a nicking endonuclease
por: van Nierop, Gijsbert P., et al.
Publicado: (2009)

Simultaneous mapping of transcript ends at single-nucleotide resolution and identification of widespread promoter-associated non-coding RNA governed by TATA elements
por: Park, Daechan, et al.
Publicado: (2014)

DNA Phosphorothioate Modifications Are Widely Distributed in the Human Microbiome
por: Sun, Yihua, et al.
Publicado: (2020)

Application of ATAC-Seq for genome-wide analysis of the chromatin state at single myofiber resolution
por: Sahinyan, Korin, et al.
Publicado: (2022)

Nick Charles, detective (The thin man) /
por: Hammett, Dashiell, 1894-1961
Publicado: (1944)

Precise and efficient nucleotide substitution near genomic nick via noncanonical homology-directed repair
por: Nakajima, Kazuhiro, et al.
Publicado: (2018)

Concerted nicking of donor and chromosomal acceptor DNA promotes homology-directed gene targeting in human cells
por: Gonçalves, Manuel A. F. V., et al.
Publicado: (2012)

Implications of Metastable Nicks and Nicked Holliday Junctions in Processing Joint Molecules in Mitosis and Meiosis
por: Machín, Félix
Publicado: (2020)

Zika: information in the nick of time
por: Walker, Jessica L, et al.
Publicado: (2017)

Deletion of the rnl gene encoding a nick-sealing RNA ligase sensitizes Deinococcus radiodurans to ionizing radiation
por: Schmier, Brad J., et al.
Publicado: (2017)

Labeling of unique sequences in double-stranded DNA at sites of vicinal nicks generated by nicking endonucleases
por: Kuhn, Heiko, et al.
Publicado: (2008)

Genome-wide analysis of 8-oxo-7,8-dihydro-2'-deoxyguanosine at single-nucleotide resolution unveils reduced occurrence of oxidative damage at G-quadruplex sites
por: An, Jiao, et al.
Publicado: (2021)

Construction of High-Resolution RAD-Seq Based Linkage Map, Anchoring Reference Genome, and QTL Mapping of the Sex Chromosome in the Marine Medaka Oryzias melastigma
por: Lee, Bo-Young, et al.
Publicado: (2019)

From damaged genome to cell surface: transcriptome changes during bacterial cell death triggered by loss of a restriction–modification gene complex
por: Asakura, Yoko, et al.
Publicado: (2009)

Loss of Elongator- and KEOPS-Dependent tRNA Modifications Leads to Severe Growth Phenotypes and Protein Aggregation in Yeast
por: Pollo-Oliveira, Leticia, et al.
Publicado: (2020)

Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq
por: Sun, Hao, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_e7j91qehgocbt8qssld1j750kp