Cargando…
Evaluation of variant calling for cpn60 barcode sequence-based microbiome profiling
Amplification and sequencing of conserved genetic barcodes such as the cpn60 gene is a common approach to determining the taxonomic composition of microbiomes. Exact sequence variant calling has been proposed as an alternative to previously established methods for aggregation of sequence reads into...
Autores principales: | Vancuren, Sarah J., Dos Santos, Scott J., Hill, Janet E. |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7347135/ https://www.ncbi.nlm.nih.gov/pubmed/32645030 http://dx.doi.org/10.1371/journal.pone.0235682 |
Ejemplares similares
-
Update on cpnDB: a reference database of chaperonin sequences
por: Vancuren, Sarah J, et al.
Publicado: (2019) -
Rapid and accurate taxonomic classification of cpn60 amplicon sequence variants
por: Ren, Qingyi, et al.
Publicado: (2023) -
Evaluating cpn60 for high-resolution profiling of the mammalian skin microbiome and detection of phylosymbiosis
por: Umbach, Alexander K., et al.
Publicado: (2023) -
Optimizing a PCR protocol for cpn60-based microbiome profiling of samples variously contaminated with host genomic DNA
por: Johnson, Lisa A, et al.
Publicado: (2015) -
Early Neonatal Meconium Does Not Have a Demonstrable Microbiota Determined through Use of Robust Negative Controls with cpn60-Based Microbiome Profiling
por: Dos Santos, Scott J., et al.
Publicado: (2021)