REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets

MOTIVATION: In this work we present REINDEER, a novel computational method that performs indexing of sequences and records their abundances across a collection of datasets. To the best of our knowledge, other indexing methods have so far been unable to record abundances efficiently across large data...

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Detalles Bibliográficos
Autores principales: Marchet, Camille, Iqbal, Zamin, Gautheret, Daniel, Salson, Mikaël, Chikhi, Rayan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Genomic Variation Analysis
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7355249/
https://www.ncbi.nlm.nih.gov/pubmed/32657392
http://dx.doi.org/10.1093/bioinformatics/btaa487

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7355249/
https://www.ncbi.nlm.nih.gov/pubmed/32657392
http://dx.doi.org/10.1093/bioinformatics/btaa487

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