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Computational Design of Enantiocomplementary Epoxide Hydrolases for Asymmetric Synthesis of Aliphatic and Aromatic Diols

The use of enzymes in preparative biocatalysis often requires tailoring enzyme selectivity by protein engineering. Herein we explore the use of computational library design and molecular dynamics simulations to create variants of limonene epoxide hydrolase that produce enantiomeric diols from meso‐e...

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Autores principales: Arabnejad, Hesam, Bombino, Elvira, Colpa, Dana I., Jekel, Peter A., Trajkovic, Milos, Wijma, Hein J., Janssen, Dick B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7383614/
https://www.ncbi.nlm.nih.gov/pubmed/31961471
http://dx.doi.org/10.1002/cbic.201900726
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author Arabnejad, Hesam
Bombino, Elvira
Colpa, Dana I.
Jekel, Peter A.
Trajkovic, Milos
Wijma, Hein J.
Janssen, Dick B.
author_facet Arabnejad, Hesam
Bombino, Elvira
Colpa, Dana I.
Jekel, Peter A.
Trajkovic, Milos
Wijma, Hein J.
Janssen, Dick B.
author_sort Arabnejad, Hesam
collection PubMed
description The use of enzymes in preparative biocatalysis often requires tailoring enzyme selectivity by protein engineering. Herein we explore the use of computational library design and molecular dynamics simulations to create variants of limonene epoxide hydrolase that produce enantiomeric diols from meso‐epoxides. Three substrates of different sizes were targeted: cis‐2,3‐butene oxide, cyclopentene oxide, and cis‐stilbene oxide. Most of the 28 designs tested were active and showed the predicted enantioselectivity. Excellent enantioselectivities were obtained for the bulky substrate cis‐stilbene oxide, and enantiocomplementary mutants produced (S,S)‐ and (R,R)‐stilbene diol with >97 % enantiomeric excess. An (R,R)‐selective mutant was used to prepare (R,R)‐stilbene diol with high enantiopurity (98 % conversion into diol, >99 % ee). Some variants displayed higher catalytic rates (k (cat)) than the original enzyme, but in most cases K (M) values increased as well. The results demonstrate the feasibility of computational design and screening to engineer enantioselective epoxide hydrolase variants with very limited laboratory screening.
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spelling pubmed-73836142020-07-27 Computational Design of Enantiocomplementary Epoxide Hydrolases for Asymmetric Synthesis of Aliphatic and Aromatic Diols Arabnejad, Hesam Bombino, Elvira Colpa, Dana I. Jekel, Peter A. Trajkovic, Milos Wijma, Hein J. Janssen, Dick B. Chembiochem Full Papers The use of enzymes in preparative biocatalysis often requires tailoring enzyme selectivity by protein engineering. Herein we explore the use of computational library design and molecular dynamics simulations to create variants of limonene epoxide hydrolase that produce enantiomeric diols from meso‐epoxides. Three substrates of different sizes were targeted: cis‐2,3‐butene oxide, cyclopentene oxide, and cis‐stilbene oxide. Most of the 28 designs tested were active and showed the predicted enantioselectivity. Excellent enantioselectivities were obtained for the bulky substrate cis‐stilbene oxide, and enantiocomplementary mutants produced (S,S)‐ and (R,R)‐stilbene diol with >97 % enantiomeric excess. An (R,R)‐selective mutant was used to prepare (R,R)‐stilbene diol with high enantiopurity (98 % conversion into diol, >99 % ee). Some variants displayed higher catalytic rates (k (cat)) than the original enzyme, but in most cases K (M) values increased as well. The results demonstrate the feasibility of computational design and screening to engineer enantioselective epoxide hydrolase variants with very limited laboratory screening. John Wiley and Sons Inc. 2020-03-05 2020-07-01 /pmc/articles/PMC7383614/ /pubmed/31961471 http://dx.doi.org/10.1002/cbic.201900726 Text en © 2020 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Full Papers
Arabnejad, Hesam
Bombino, Elvira
Colpa, Dana I.
Jekel, Peter A.
Trajkovic, Milos
Wijma, Hein J.
Janssen, Dick B.
Computational Design of Enantiocomplementary Epoxide Hydrolases for Asymmetric Synthesis of Aliphatic and Aromatic Diols
title Computational Design of Enantiocomplementary Epoxide Hydrolases for Asymmetric Synthesis of Aliphatic and Aromatic Diols
title_full Computational Design of Enantiocomplementary Epoxide Hydrolases for Asymmetric Synthesis of Aliphatic and Aromatic Diols
title_fullStr Computational Design of Enantiocomplementary Epoxide Hydrolases for Asymmetric Synthesis of Aliphatic and Aromatic Diols
title_full_unstemmed Computational Design of Enantiocomplementary Epoxide Hydrolases for Asymmetric Synthesis of Aliphatic and Aromatic Diols
title_short Computational Design of Enantiocomplementary Epoxide Hydrolases for Asymmetric Synthesis of Aliphatic and Aromatic Diols
title_sort computational design of enantiocomplementary epoxide hydrolases for asymmetric synthesis of aliphatic and aromatic diols
topic Full Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7383614/
https://www.ncbi.nlm.nih.gov/pubmed/31961471
http://dx.doi.org/10.1002/cbic.201900726
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