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Computational Design of Enantiocomplementary Epoxide Hydrolases for Asymmetric Synthesis of Aliphatic and Aromatic Diols
The use of enzymes in preparative biocatalysis often requires tailoring enzyme selectivity by protein engineering. Herein we explore the use of computational library design and molecular dynamics simulations to create variants of limonene epoxide hydrolase that produce enantiomeric diols from meso‐e...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7383614/ https://www.ncbi.nlm.nih.gov/pubmed/31961471 http://dx.doi.org/10.1002/cbic.201900726 |
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author | Arabnejad, Hesam Bombino, Elvira Colpa, Dana I. Jekel, Peter A. Trajkovic, Milos Wijma, Hein J. Janssen, Dick B. |
author_facet | Arabnejad, Hesam Bombino, Elvira Colpa, Dana I. Jekel, Peter A. Trajkovic, Milos Wijma, Hein J. Janssen, Dick B. |
author_sort | Arabnejad, Hesam |
collection | PubMed |
description | The use of enzymes in preparative biocatalysis often requires tailoring enzyme selectivity by protein engineering. Herein we explore the use of computational library design and molecular dynamics simulations to create variants of limonene epoxide hydrolase that produce enantiomeric diols from meso‐epoxides. Three substrates of different sizes were targeted: cis‐2,3‐butene oxide, cyclopentene oxide, and cis‐stilbene oxide. Most of the 28 designs tested were active and showed the predicted enantioselectivity. Excellent enantioselectivities were obtained for the bulky substrate cis‐stilbene oxide, and enantiocomplementary mutants produced (S,S)‐ and (R,R)‐stilbene diol with >97 % enantiomeric excess. An (R,R)‐selective mutant was used to prepare (R,R)‐stilbene diol with high enantiopurity (98 % conversion into diol, >99 % ee). Some variants displayed higher catalytic rates (k (cat)) than the original enzyme, but in most cases K (M) values increased as well. The results demonstrate the feasibility of computational design and screening to engineer enantioselective epoxide hydrolase variants with very limited laboratory screening. |
format | Online Article Text |
id | pubmed-7383614 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-73836142020-07-27 Computational Design of Enantiocomplementary Epoxide Hydrolases for Asymmetric Synthesis of Aliphatic and Aromatic Diols Arabnejad, Hesam Bombino, Elvira Colpa, Dana I. Jekel, Peter A. Trajkovic, Milos Wijma, Hein J. Janssen, Dick B. Chembiochem Full Papers The use of enzymes in preparative biocatalysis often requires tailoring enzyme selectivity by protein engineering. Herein we explore the use of computational library design and molecular dynamics simulations to create variants of limonene epoxide hydrolase that produce enantiomeric diols from meso‐epoxides. Three substrates of different sizes were targeted: cis‐2,3‐butene oxide, cyclopentene oxide, and cis‐stilbene oxide. Most of the 28 designs tested were active and showed the predicted enantioselectivity. Excellent enantioselectivities were obtained for the bulky substrate cis‐stilbene oxide, and enantiocomplementary mutants produced (S,S)‐ and (R,R)‐stilbene diol with >97 % enantiomeric excess. An (R,R)‐selective mutant was used to prepare (R,R)‐stilbene diol with high enantiopurity (98 % conversion into diol, >99 % ee). Some variants displayed higher catalytic rates (k (cat)) than the original enzyme, but in most cases K (M) values increased as well. The results demonstrate the feasibility of computational design and screening to engineer enantioselective epoxide hydrolase variants with very limited laboratory screening. John Wiley and Sons Inc. 2020-03-05 2020-07-01 /pmc/articles/PMC7383614/ /pubmed/31961471 http://dx.doi.org/10.1002/cbic.201900726 Text en © 2020 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Full Papers Arabnejad, Hesam Bombino, Elvira Colpa, Dana I. Jekel, Peter A. Trajkovic, Milos Wijma, Hein J. Janssen, Dick B. Computational Design of Enantiocomplementary Epoxide Hydrolases for Asymmetric Synthesis of Aliphatic and Aromatic Diols |
title | Computational Design of Enantiocomplementary Epoxide Hydrolases for Asymmetric Synthesis of Aliphatic and Aromatic Diols |
title_full | Computational Design of Enantiocomplementary Epoxide Hydrolases for Asymmetric Synthesis of Aliphatic and Aromatic Diols |
title_fullStr | Computational Design of Enantiocomplementary Epoxide Hydrolases for Asymmetric Synthesis of Aliphatic and Aromatic Diols |
title_full_unstemmed | Computational Design of Enantiocomplementary Epoxide Hydrolases for Asymmetric Synthesis of Aliphatic and Aromatic Diols |
title_short | Computational Design of Enantiocomplementary Epoxide Hydrolases for Asymmetric Synthesis of Aliphatic and Aromatic Diols |
title_sort | computational design of enantiocomplementary epoxide hydrolases for asymmetric synthesis of aliphatic and aromatic diols |
topic | Full Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7383614/ https://www.ncbi.nlm.nih.gov/pubmed/31961471 http://dx.doi.org/10.1002/cbic.201900726 |
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