Cargando…

POLE and POLD1 germline exonuclease domain pathogenic variants, a rare event in colorectal cancer from the Middle East

BACKGROUND: Colorectal cancer (CRC) is a major contributor to morbidity and mortality related to cancer. Only ~5% of all CRCs occur as a result of pathogenic variants in well‐defined CRC predisposing genes. The frequency and effect of exonuclease domain pathogenic variants of POLE and POLD1 genes in...

Descripción completa

Detalles Bibliográficos
Autores principales: Siraj, Abdul K., Bu, Rong, Iqbal, Kaleem, Parvathareddy, Sandeep K., Masoodi, Tariq, Siraj, Nabil, Al‐Rasheed, Maha, Kong, Yan, Ahmed, Saeeda O., Al‐Obaisi, Khadija A. S., Victoria, Ingrid G., Arshad, Maham, Al‐Dayel, Fouad, Abduljabbar, Alaa, Ashari, Luai H., Al‐Kuraya, Khawla S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7434734/
https://www.ncbi.nlm.nih.gov/pubmed/32567205
http://dx.doi.org/10.1002/mgg3.1368
_version_ 1783572196405280768
author Siraj, Abdul K.
Bu, Rong
Iqbal, Kaleem
Parvathareddy, Sandeep K.
Masoodi, Tariq
Siraj, Nabil
Al‐Rasheed, Maha
Kong, Yan
Ahmed, Saeeda O.
Al‐Obaisi, Khadija A. S.
Victoria, Ingrid G.
Arshad, Maham
Al‐Dayel, Fouad
Abduljabbar, Alaa
Ashari, Luai H.
Al‐Kuraya, Khawla S.
author_facet Siraj, Abdul K.
Bu, Rong
Iqbal, Kaleem
Parvathareddy, Sandeep K.
Masoodi, Tariq
Siraj, Nabil
Al‐Rasheed, Maha
Kong, Yan
Ahmed, Saeeda O.
Al‐Obaisi, Khadija A. S.
Victoria, Ingrid G.
Arshad, Maham
Al‐Dayel, Fouad
Abduljabbar, Alaa
Ashari, Luai H.
Al‐Kuraya, Khawla S.
author_sort Siraj, Abdul K.
collection PubMed
description BACKGROUND: Colorectal cancer (CRC) is a major contributor to morbidity and mortality related to cancer. Only ~5% of all CRCs occur as a result of pathogenic variants in well‐defined CRC predisposing genes. The frequency and effect of exonuclease domain pathogenic variants of POLE and POLD1 genes in Middle Eastern CRCs is still unknown. METHODS: Targeted capture sequencing and Sanger sequencing technologies were employed to investigate the germline exonuclease domain pathogenic variants of POLE and POLD1 in Middle Eastern CRCs. Immunohistochemical analysis of POLE and POLD1 was performed to look for associations between protein expression and clinico‐pathological characteristics. RESULTS: Five damaging or possibly damaging variants (0.44%) were detected in 1,135 CRC cases, four in POLE gene (0.35%, 4/1,135) and one (0.1%, 1/1,135) in POLD1 gene. Furthermore, low POLE protein expression was identified in 38.9% (417/1071) cases and a significant association with lymph node involvement (p = .0184) and grade 3 tumors (p = .0139) was observed. Whereas, low POLD1 expression was observed in 51.9% (555/1069) of cases and was significantly associated with adenocarcinoma histology (p = .0164), larger tumor size (T3 and T4 tumors; p = .0012), and stage III tumors (p = .0341). CONCLUSION: POLE and POLD1 exonuclease domain pathogenic variants frequency in CRC cases was very low and these exonuclease domain pathogenic variants might be rare causative events of CRC in the Middle East. POLE and POLD1 can be included in multi‐gene panels to screen CRC patients.
format Online
Article
Text
id pubmed-7434734
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-74347342020-08-20 POLE and POLD1 germline exonuclease domain pathogenic variants, a rare event in colorectal cancer from the Middle East Siraj, Abdul K. Bu, Rong Iqbal, Kaleem Parvathareddy, Sandeep K. Masoodi, Tariq Siraj, Nabil Al‐Rasheed, Maha Kong, Yan Ahmed, Saeeda O. Al‐Obaisi, Khadija A. S. Victoria, Ingrid G. Arshad, Maham Al‐Dayel, Fouad Abduljabbar, Alaa Ashari, Luai H. Al‐Kuraya, Khawla S. Mol Genet Genomic Med Original Articles BACKGROUND: Colorectal cancer (CRC) is a major contributor to morbidity and mortality related to cancer. Only ~5% of all CRCs occur as a result of pathogenic variants in well‐defined CRC predisposing genes. The frequency and effect of exonuclease domain pathogenic variants of POLE and POLD1 genes in Middle Eastern CRCs is still unknown. METHODS: Targeted capture sequencing and Sanger sequencing technologies were employed to investigate the germline exonuclease domain pathogenic variants of POLE and POLD1 in Middle Eastern CRCs. Immunohistochemical analysis of POLE and POLD1 was performed to look for associations between protein expression and clinico‐pathological characteristics. RESULTS: Five damaging or possibly damaging variants (0.44%) were detected in 1,135 CRC cases, four in POLE gene (0.35%, 4/1,135) and one (0.1%, 1/1,135) in POLD1 gene. Furthermore, low POLE protein expression was identified in 38.9% (417/1071) cases and a significant association with lymph node involvement (p = .0184) and grade 3 tumors (p = .0139) was observed. Whereas, low POLD1 expression was observed in 51.9% (555/1069) of cases and was significantly associated with adenocarcinoma histology (p = .0164), larger tumor size (T3 and T4 tumors; p = .0012), and stage III tumors (p = .0341). CONCLUSION: POLE and POLD1 exonuclease domain pathogenic variants frequency in CRC cases was very low and these exonuclease domain pathogenic variants might be rare causative events of CRC in the Middle East. POLE and POLD1 can be included in multi‐gene panels to screen CRC patients. John Wiley and Sons Inc. 2020-06-22 /pmc/articles/PMC7434734/ /pubmed/32567205 http://dx.doi.org/10.1002/mgg3.1368 Text en © 2020 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals LLC This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Original Articles
Siraj, Abdul K.
Bu, Rong
Iqbal, Kaleem
Parvathareddy, Sandeep K.
Masoodi, Tariq
Siraj, Nabil
Al‐Rasheed, Maha
Kong, Yan
Ahmed, Saeeda O.
Al‐Obaisi, Khadija A. S.
Victoria, Ingrid G.
Arshad, Maham
Al‐Dayel, Fouad
Abduljabbar, Alaa
Ashari, Luai H.
Al‐Kuraya, Khawla S.
POLE and POLD1 germline exonuclease domain pathogenic variants, a rare event in colorectal cancer from the Middle East
title POLE and POLD1 germline exonuclease domain pathogenic variants, a rare event in colorectal cancer from the Middle East
title_full POLE and POLD1 germline exonuclease domain pathogenic variants, a rare event in colorectal cancer from the Middle East
title_fullStr POLE and POLD1 germline exonuclease domain pathogenic variants, a rare event in colorectal cancer from the Middle East
title_full_unstemmed POLE and POLD1 germline exonuclease domain pathogenic variants, a rare event in colorectal cancer from the Middle East
title_short POLE and POLD1 germline exonuclease domain pathogenic variants, a rare event in colorectal cancer from the Middle East
title_sort pole and pold1 germline exonuclease domain pathogenic variants, a rare event in colorectal cancer from the middle east
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7434734/
https://www.ncbi.nlm.nih.gov/pubmed/32567205
http://dx.doi.org/10.1002/mgg3.1368
work_keys_str_mv AT sirajabdulk poleandpold1germlineexonucleasedomainpathogenicvariantsarareeventincolorectalcancerfromthemiddleeast
AT burong poleandpold1germlineexonucleasedomainpathogenicvariantsarareeventincolorectalcancerfromthemiddleeast
AT iqbalkaleem poleandpold1germlineexonucleasedomainpathogenicvariantsarareeventincolorectalcancerfromthemiddleeast
AT parvathareddysandeepk poleandpold1germlineexonucleasedomainpathogenicvariantsarareeventincolorectalcancerfromthemiddleeast
AT masooditariq poleandpold1germlineexonucleasedomainpathogenicvariantsarareeventincolorectalcancerfromthemiddleeast
AT sirajnabil poleandpold1germlineexonucleasedomainpathogenicvariantsarareeventincolorectalcancerfromthemiddleeast
AT alrasheedmaha poleandpold1germlineexonucleasedomainpathogenicvariantsarareeventincolorectalcancerfromthemiddleeast
AT kongyan poleandpold1germlineexonucleasedomainpathogenicvariantsarareeventincolorectalcancerfromthemiddleeast
AT ahmedsaeedao poleandpold1germlineexonucleasedomainpathogenicvariantsarareeventincolorectalcancerfromthemiddleeast
AT alobaisikhadijaas poleandpold1germlineexonucleasedomainpathogenicvariantsarareeventincolorectalcancerfromthemiddleeast
AT victoriaingridg poleandpold1germlineexonucleasedomainpathogenicvariantsarareeventincolorectalcancerfromthemiddleeast
AT arshadmaham poleandpold1germlineexonucleasedomainpathogenicvariantsarareeventincolorectalcancerfromthemiddleeast
AT aldayelfouad poleandpold1germlineexonucleasedomainpathogenicvariantsarareeventincolorectalcancerfromthemiddleeast
AT abduljabbaralaa poleandpold1germlineexonucleasedomainpathogenicvariantsarareeventincolorectalcancerfromthemiddleeast
AT ashariluaih poleandpold1germlineexonucleasedomainpathogenicvariantsarareeventincolorectalcancerfromthemiddleeast
AT alkurayakhawlas poleandpold1germlineexonucleasedomainpathogenicvariantsarareeventincolorectalcancerfromthemiddleeast