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POLE and POLD1 germline exonuclease domain pathogenic variants, a rare event in colorectal cancer from the Middle East
BACKGROUND: Colorectal cancer (CRC) is a major contributor to morbidity and mortality related to cancer. Only ~5% of all CRCs occur as a result of pathogenic variants in well‐defined CRC predisposing genes. The frequency and effect of exonuclease domain pathogenic variants of POLE and POLD1 genes in...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7434734/ https://www.ncbi.nlm.nih.gov/pubmed/32567205 http://dx.doi.org/10.1002/mgg3.1368 |
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author | Siraj, Abdul K. Bu, Rong Iqbal, Kaleem Parvathareddy, Sandeep K. Masoodi, Tariq Siraj, Nabil Al‐Rasheed, Maha Kong, Yan Ahmed, Saeeda O. Al‐Obaisi, Khadija A. S. Victoria, Ingrid G. Arshad, Maham Al‐Dayel, Fouad Abduljabbar, Alaa Ashari, Luai H. Al‐Kuraya, Khawla S. |
author_facet | Siraj, Abdul K. Bu, Rong Iqbal, Kaleem Parvathareddy, Sandeep K. Masoodi, Tariq Siraj, Nabil Al‐Rasheed, Maha Kong, Yan Ahmed, Saeeda O. Al‐Obaisi, Khadija A. S. Victoria, Ingrid G. Arshad, Maham Al‐Dayel, Fouad Abduljabbar, Alaa Ashari, Luai H. Al‐Kuraya, Khawla S. |
author_sort | Siraj, Abdul K. |
collection | PubMed |
description | BACKGROUND: Colorectal cancer (CRC) is a major contributor to morbidity and mortality related to cancer. Only ~5% of all CRCs occur as a result of pathogenic variants in well‐defined CRC predisposing genes. The frequency and effect of exonuclease domain pathogenic variants of POLE and POLD1 genes in Middle Eastern CRCs is still unknown. METHODS: Targeted capture sequencing and Sanger sequencing technologies were employed to investigate the germline exonuclease domain pathogenic variants of POLE and POLD1 in Middle Eastern CRCs. Immunohistochemical analysis of POLE and POLD1 was performed to look for associations between protein expression and clinico‐pathological characteristics. RESULTS: Five damaging or possibly damaging variants (0.44%) were detected in 1,135 CRC cases, four in POLE gene (0.35%, 4/1,135) and one (0.1%, 1/1,135) in POLD1 gene. Furthermore, low POLE protein expression was identified in 38.9% (417/1071) cases and a significant association with lymph node involvement (p = .0184) and grade 3 tumors (p = .0139) was observed. Whereas, low POLD1 expression was observed in 51.9% (555/1069) of cases and was significantly associated with adenocarcinoma histology (p = .0164), larger tumor size (T3 and T4 tumors; p = .0012), and stage III tumors (p = .0341). CONCLUSION: POLE and POLD1 exonuclease domain pathogenic variants frequency in CRC cases was very low and these exonuclease domain pathogenic variants might be rare causative events of CRC in the Middle East. POLE and POLD1 can be included in multi‐gene panels to screen CRC patients. |
format | Online Article Text |
id | pubmed-7434734 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-74347342020-08-20 POLE and POLD1 germline exonuclease domain pathogenic variants, a rare event in colorectal cancer from the Middle East Siraj, Abdul K. Bu, Rong Iqbal, Kaleem Parvathareddy, Sandeep K. Masoodi, Tariq Siraj, Nabil Al‐Rasheed, Maha Kong, Yan Ahmed, Saeeda O. Al‐Obaisi, Khadija A. S. Victoria, Ingrid G. Arshad, Maham Al‐Dayel, Fouad Abduljabbar, Alaa Ashari, Luai H. Al‐Kuraya, Khawla S. Mol Genet Genomic Med Original Articles BACKGROUND: Colorectal cancer (CRC) is a major contributor to morbidity and mortality related to cancer. Only ~5% of all CRCs occur as a result of pathogenic variants in well‐defined CRC predisposing genes. The frequency and effect of exonuclease domain pathogenic variants of POLE and POLD1 genes in Middle Eastern CRCs is still unknown. METHODS: Targeted capture sequencing and Sanger sequencing technologies were employed to investigate the germline exonuclease domain pathogenic variants of POLE and POLD1 in Middle Eastern CRCs. Immunohistochemical analysis of POLE and POLD1 was performed to look for associations between protein expression and clinico‐pathological characteristics. RESULTS: Five damaging or possibly damaging variants (0.44%) were detected in 1,135 CRC cases, four in POLE gene (0.35%, 4/1,135) and one (0.1%, 1/1,135) in POLD1 gene. Furthermore, low POLE protein expression was identified in 38.9% (417/1071) cases and a significant association with lymph node involvement (p = .0184) and grade 3 tumors (p = .0139) was observed. Whereas, low POLD1 expression was observed in 51.9% (555/1069) of cases and was significantly associated with adenocarcinoma histology (p = .0164), larger tumor size (T3 and T4 tumors; p = .0012), and stage III tumors (p = .0341). CONCLUSION: POLE and POLD1 exonuclease domain pathogenic variants frequency in CRC cases was very low and these exonuclease domain pathogenic variants might be rare causative events of CRC in the Middle East. POLE and POLD1 can be included in multi‐gene panels to screen CRC patients. John Wiley and Sons Inc. 2020-06-22 /pmc/articles/PMC7434734/ /pubmed/32567205 http://dx.doi.org/10.1002/mgg3.1368 Text en © 2020 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals LLC This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Original Articles Siraj, Abdul K. Bu, Rong Iqbal, Kaleem Parvathareddy, Sandeep K. Masoodi, Tariq Siraj, Nabil Al‐Rasheed, Maha Kong, Yan Ahmed, Saeeda O. Al‐Obaisi, Khadija A. S. Victoria, Ingrid G. Arshad, Maham Al‐Dayel, Fouad Abduljabbar, Alaa Ashari, Luai H. Al‐Kuraya, Khawla S. POLE and POLD1 germline exonuclease domain pathogenic variants, a rare event in colorectal cancer from the Middle East |
title | POLE and POLD1 germline exonuclease domain pathogenic variants, a rare event in colorectal cancer from the Middle East |
title_full | POLE and POLD1 germline exonuclease domain pathogenic variants, a rare event in colorectal cancer from the Middle East |
title_fullStr | POLE and POLD1 germline exonuclease domain pathogenic variants, a rare event in colorectal cancer from the Middle East |
title_full_unstemmed | POLE and POLD1 germline exonuclease domain pathogenic variants, a rare event in colorectal cancer from the Middle East |
title_short | POLE and POLD1 germline exonuclease domain pathogenic variants, a rare event in colorectal cancer from the Middle East |
title_sort | pole and pold1 germline exonuclease domain pathogenic variants, a rare event in colorectal cancer from the middle east |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7434734/ https://www.ncbi.nlm.nih.gov/pubmed/32567205 http://dx.doi.org/10.1002/mgg3.1368 |
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